RnoINT0079508 @ rn6
Intron Retention
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54196369-54197488:+
Coord C1 exon
chr17:54196369-54196514
Coord A exon
chr17:54196515-54197339
Coord C2 exon
chr17:54197340-54197488
Length
825 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TCTGTAATTGCATCACTAAGGGC
3' ss Score
1.27
Exon sequences
Seq C1 exon
ACCTATGTTCCTTATCGAGACAGTAAAATGACCAGAATTCTTCAAGATTCATTAGGTGGCAACTGTAGGACCACTATTGTCATTTGCTGCTCTCCGTCATCTTACAATGAGTCTGAGACAAAGTCAACACTCCTCTTTGGTCAAAG
Seq A exon
GTTTGTTGAAATACAAAGCCTAAAGACATAGCATTAAAGTTACTAATGTCAGATAGCCACTACTCAAATCCAGACATACTGTCAGAGAGCTAGATCCTGTACTGTGAATCAGGACATAGGTCATATAAGTTAGAGCTGTATTTTAGACCTAACAAACTTTAACTTTTCACAGACATTAACATTAATTGAGAAATTTCATTGTCTAATTTTCTTCTGATGAAAGTAAATGTCTGAGTTAGATGACGAAGTAAAAGCTTTTCAAATATATGAGCCTGTGTGAAGCTCACTGACACACTTGAAGGCTCGATTAACATACATGAAATAGCTACTTTGTGAAAATCACCGACAGCCTTATCTTAGACCTGCAGGGATAGGTAACGTAGGTTACTGCTTCAGCCTTGCCAAGTGAGTTGGCAAAATAAATATATTTTCTTAGTTTTGATTTTTTTTTTCAAAGATTTATTTATTTATTCTATATAAGTACATTGTAGCTGCCTTCAGACACACCAGAAGAGGGCATCGGATCTCGTTACTGAGGGATGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCTCCAGCCTGTTATTTTTAGTGTTACCAAAGATTGAGTGCAGATAGAAATTTATTTGTGAATAGATATTTTTTTAGAATTTGTTCTAAGAAAGAACTAGATAATCTTGAACAATTTGTTACTTAGCTATATTATGTATTAAACAGGAATGTCACTTAAAAATACTTTCAGTCATATCCTTTTTTTTTTTTTCTTTCTGTAATGATTACTCTTCCTTACACATGTCATCTCTTCTGTAATTGCATCACTAAG
Seq C2 exon
GGCCAAAACAATAAAGAACACAGTCTGTGTCAACGTAGAGTTAACTGCAGAGCAGTGGAAAAAGAAGTATGAAAAAGAAAAGGAAAAAAATAAGACTCTACGGAACACCATTCAGTGGCTGGAAAACGAGCTCAACCGATGGCGTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466:ENSRNOT00000023861:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(15.4=100)
A:
NA
C2:
PF0022518=Kinesin=PD(1.3=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGTTCCTTATCGAGACAGT
R:
GTTACGCCATCGGTTGAGCTC
Band lengths:
294-1119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]