BtaINT0087208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004970 | LRRC24
Description
Bos taurus leucine rich repeat containing 24 (LRRC24), mRNA. [Source:RefSeq mRNA;Acc:NM_001083678]
Coordinates
chr14:1606792-1607472:+
Coord C1 exon
chr14:1606792-1607042
Coord A exon
chr14:1607043-1607193
Coord C2 exon
chr14:1607194-1607472
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCTCTCTCCCTCCGATACAGACG
3' ss Score
7.82
Exon sequences
Seq C1 exon
GAGTTGCATCCCACCGGGGCCGGACTGTAGGGAGGCTGCTGGAAAGGCTGCAGGCTTGTGCCCCGCGGCCGGTCCCGCGAGAGATGGCCCCAGGGGCGCCTGCACTGCTGCTATTGTCGCTGCTGTCTCTGCCGGGTCTCCCGCCTCGCGCTGCCGCCTGCCCCGCTGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGCGGTGCTCTGCGACTGCGCGTAGTCCCGCCTGGAATCCCACCCGGGACGCAG
Seq A exon
GTGGGCACCGCGTGGGGCTGCCGGGCGGCGGTAAGGGGTGCCAGCGAAACGGAGGGACGGGTGTGTGAGCCTCCCCGTGGGTGAATGGGGCGCTCTAGGGAAAATAAAGACCCCTTCAGAGGGGTAAGCGCCCTCTCTCCCTCCGATACAG
Seq C2 exon
ACGCTGTTCCTGCAGGACAACAGCATCGCGCGCCTGGAGCCGGGCATCCTGGCGCCCCTCGCCTCCCTGCGCCATCTCTACCTGCACAACAACAGCCTACACGCCCTGGAGTCGGGCGCCTTCCGCACGCAGTCGCGCCTGCTGGAACTGGCGCTCACTGGCAACCGGCTGCGCGGCTTGCGCGTCGGTGCTTTCGCAGGCCTGGCCCAACTGCGCGTGCTCTACCTAGCTGGCAACCAGCTGGTACAGCTGCTGGATTTCACCTTCCTACACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004970:ENSBTAT00000006543:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(5.9=5.4)
A:
NA
C2:
PF138551=LRR_8=PD(90.2=49.5),PF127992=LRR_4=WD(100=50.5),PF138551=LRR_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTATTGTCGCTGCTGTCT
R:
TGTAGGCTGTTGTTGTGCAGG
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development