RnoINT0086831 @ rn6
Intron Retention
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117782874-117783578:-
Coord C1 exon
chr7:117783307-117783578
Coord A exon
chr7:117783153-117783306
Coord C2 exon
chr7:117782874-117783152
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTCGTCCCTACAACCTTTAGACG
3' ss Score
4.46
Exon sequences
Seq C1 exon
CACAGGCCTGCTAACCTGTTTCAGGAGGCGCATCCCATCCGGGTCCATTCTCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCCAGGACCCCCCGCGCTGCTGCTGCTACTGCTGGGTTTATTGCTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACCGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCCCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
Seq A exon
GTGGGCACTGTGCGGGACTGGCGGGCCTTGGCTTGGAGTAATGGGCTGCGAGTGTCCATCAGAATCGAGTGTGTGAACCTAAGAGTCTAGTGAGTGGACGGTCGCTAGGACATGTCCCACAATGAAGTAATATTGTCGTCCCTACAACCTTTAG
Seq C2 exon
ACGCTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCGCCCTGGCACCGCTTGCTGCCCTGCGACACCTCTACCTGCATAACAATACCCTGCGGGCGCTGGAGTCTGGCGCCTTTCGTGCACAGCCCCGCCTGCTTGAACTGGCGCTGACCGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCCTTTGTGGGCCTGGTCCAGCTTCGAGTGCTTTACCTGGCTGGAAACCAGCTGGCGAAGCTGCTAGATTTCACCTTTTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204:ENSRNOT00000030517:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTACTGCTGGGTTTA
R:
TATGCAGGTAGAGGTGTCGCA
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]