MmuINT0092935 @ mm9
Intron Retention
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76548652-76549329:-
Coord C1 exon
chr15:76549082-76549329
Coord A exon
chr15:76548931-76549081
Coord C2 exon
chr15:76548652-76548930
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTCGTCCCCACAACCTTCAGACA
3' ss Score
5.75
Exon sequences
Seq C1 exon
GAGGCGCATCCTATCCAGGTCCATTCCCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCTAAGGGCCCCCACGCTGCTGCTGCTACTGCTGGGGTTATTGTTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACTGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCTCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
Seq A exon
GTGGGCACTGTGTGGGACTGGAGGGACTTGGATCGGAGTAGTGGGCTACAGTGCCCGTCGGAATAGAGTGTGTGAATGTAAGAGATGTAATGGAAGGTCACTGGGACATGCCCCCACAATGAAGTAATCTTTTCGTCCCCACAACCTTCAG
Seq C2 exon
ACACTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCTCCCTGGCACCTCTTGCTGCCCTGCGCCACCTCTACCTGCACAACAATACCCTGCGTGCGCTGGAGTCCGGTGCCTTCCGCGCACAGCCTCGCCTGCTTGAACTGGCGCTCACTGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCATTTGTGGGCTTGGTCCAGCTTCGTGTGCTTTACCTGGCTGGAAACCAGCTGGCAAAGCTGCTGGATTTCACCTTCTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-Lrrc24:NM_198119:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=63.4),PF138551=LRR_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTACTGCTGGGGTTAT
R:
GCAGGGTATTGTTGTGCAGGT
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: