HsaINT0096750 @ hg38
Intron Retention
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144524441-144525033:-
Coord C1 exon
chr8:144524816-144525033
Coord A exon
chr8:144524720-144524815
Coord C2 exon
chr8:144524441-144524719
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCTCTTTCCCCGGCCTGCAGACA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAGGGCACGCGTCTGCGGCTGAACCGCGGAAGGGCCGGTGAGGAACCGGGCCTCGGGAGATGGCCCTGAGGGCCCCCGCACTGCTGCCGCTGCTGCTGCTACTACTGCCGCTCCGCGCCGCCGGCTGCCCAGCAGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGTGGCGCCCTGCGGTTGCGCGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAG
Seq A exon
GTGGGCACCGTGTGGAGCTGCGGGAGGACGGGGTGCCCCCAGGGAGAGGAAGACCCCCGCAACGGGGTAAGCGCCTCCTCTTTCCCCGGCCTGCAG
Seq C2 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402:ENST00000529415:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTGCTACTACTG
R:
CTAGGCGGGCGATGTTGTTG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development