HsaINT0096750 @ hg19
Intron Retention
Gene
ENSG00000177021 | LRRC24
Description
NA
Coordinates
chr8:145749825-145750417:-
Coord C1 exon
chr8:145750200-145750417
Coord A exon
chr8:145750104-145750199
Coord C2 exon
chr8:145749825-145750103
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCTCTTTCCCCGGCCTGCAGACA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAGGGCACGCGTCTGCGGCTGAACCGCGGAAGGGCCGGTGAGGAACCGGGCCTCGGGAGATGGCCCTGAGGGCCCCCGCACTGCTGCCGCTGCTGCTGCTACTACTGCCGCTCCGCGCCGCCGGCTGCCCAGCAGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGTGGCGCCCTGCGGTTGCGCGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAG
Seq A exon
GTGGGCACCGTGTGGAGCTGCGGGAGGACGGGGTGCCCCCAGGGAGAGGAAGACCCCCGCAACGGGGTAAGCGCCTCCTCTTTCCCCGGCCTGCAG
Seq C2 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177021-LRRC24:NM_001024678:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTGCTACTACTG
R:
CTAGGCGGGCGATGTTGTTG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)