BtaINT0087210 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004970 | LRRC24
Description
Bos taurus leucine rich repeat containing 24 (LRRC24), mRNA. [Source:RefSeq mRNA;Acc:NM_001083678]
Coordinates
chr14:1607619-1609477:+
Coord C1 exon
chr14:1607619-1607787
Coord A exon
chr14:1607788-1608465
Coord C2 exon
chr14:1608466-1609477
Length
678 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TGCTGCTGCTCCACCTACAGAGA
3' ss Score
7.45
Exon sequences
Seq C1 exon
CGACTGCAGGAGCTGCACCTGCAGGAAAACAGCATTGAGCTGCTGGAGGACCAGGCCCTGGCTGGGCTCTCCTCACTGGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGGGAGGCCCTGCAGCCACTGGCCAGCCTGCAGGTCCTGCGCCTCACAG
Seq A exon
GTAATTCTTTCTGGAGGCAAGGGGCTCTCATGCAAAGGCAGCTTCCTTGGCCACAGTGGTGGCACTAGAGAGCCAGCCAGCTGTGGAAGGGGCTCCAGTGGCAGCCCTGGGGGGCGGGCAGCACTACCTACCCACAGCCATGATAGAAAGCTGCTAGGAACAAGGGTAGAGTCATAGCTGCCTAAGGGAGACAGAATATGTACAAGGCCCTGAACAAACCAGACAGCTGAGCAGCTTCCACATTACTGAGCCAGGAGAGGGCCTGCAGGAAAAAACTGGAAACATGACCAAGAGTGGGGACATTTCCTCCAGACAGCGCCTGTAGACAAAGCTGGCAGGATGTGCAAAGTCTTAGTGCTGGTGGGATGTCTATGTGGACACAGAGGTTCCCCTCAAATAGCAAAACTTGTGGCACGGAAACGCCAGGAACAGGAGCTTTCTCAGACTGGTGAAATGAATTGGACATGCATCACAGAACCGAGTTTGGGGTGTGTGTGTGTGGGGGGGGGGGGTGGATGGGTGCTGCCCACTCTAAGGAGCCCCCTGTCAGAGAGAAGTGCCAAGGGTCCCACACGGTGTTAGGTAAGAGGGCTCCTGCTCTTGCCAACAACCCCAACCGCACAGGCTGTGTTCCAGAGCCACCCCTGAGCTACATGCCTGCTGCTGCTCCACCTACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGTGCCCTGCACTGGCTGGGAGCCTGGATCAAGGAGGGAGGCCAGCGACTGCTCAGCTCCAGGGACAAGAAGATCCTGTGTGCAGAGCCCCCGCGCCTGGCACTTCAGAGTCTCCTGGAAGTATCTGGAAGTAGCCTCATCTGCATCCCACCGTCTGTGCACGTGGAGCCGCTGGAGGTGACAGCCAACCTGGGTGAGGACCTGCGGGTGGCCTGCCAGGCTTCAGGTTACCCGCAGCCCCTGGTGACCTGGAGAAAGGTGGCACAGCCTCGCGAGGGTGCACCTCGCGCCCAGGCGCAGCCGGAAGTTGGGTGGCGGGGCACAGGAGGTCTCGGGGCCTCCGACACCGGCAGCGGCATGCTCTTCCTCACCAACATCACCCTGGCCCACGCCGGAAAGTACGAGTGTGAGGCCTCCAACGCCGGAGGCGCCGCCCGAGTACCCTTCCAGCTCTTGGTCAACGTGTCCCGGCAGCAGCAGCTGGCACCCGCGCCGCCCCCGGCCGGCGGCCCAGTCAGCCACGAGCCCCTGCCCGAGACGGGCAGCATGGCCTTCCGTGCCCTGGGCCTGGCCACACAGACGGCCATCGCGGCTGCCATTGCGCTCCTGGCGCTCACGGCTCTGTTACTGGCGACCATGATCTGCCGCAGGCGGCGCAGGCGTAAAAAGGCGCCGGGGCCTTCCGGGGAGGGAGCGCTCTTCGTCAACGACTACTCCGACGGGCCCTGCACCTTCGCGCAGCTCGAGGAGCTCCGCGACGAGCGGGGCCACGAGATGTTCGTCATCGACCGTTCCAAGCCGCTCTTCGCCGAGGGCCCGGCGGAAGCGGCCGAAGCGCCTGGAGTCGCGCAGGGGCTCCCACTGCAGCCCCCCTCCGCCTACGAGATCCACTGCTGAGGGGCGGGGCGCGGGCTGATGACGTGGGTACCGCGGATTGGCCGGCCCGACTCACCCGCGCATGCCCCAGCGTGGTCAGTAAAGGGTGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004970:ENSBTAT00000006543:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.236
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(93.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=0.7),PF0767911=I-set=WD(100=33.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTCACTGGCACTGCT
R:
GGTAACCTGAAGCCTGGCAG
Band lengths:
355-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development