HsaINT0096752 @ hg38
Intron Retention
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144522377-144524278:-
Coord C1 exon
chr8:144524110-144524278
Coord A exon
chr8:144523410-144524109
Coord C2 exon
chr8:144522377-144523409
Length
700 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTAACGCTGCTCTCCCACAGAGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
Seq A exon
GTACCTCTTCCTCGGAAAGCGTCTCTGTCTGGGCCACGGTGTTGGCAGTAGGGAGCAGGCTCATGTGTGGAGGGGCTCTGACATCAGGCAACTGGGCAGCAGTCTGGAAGGCTGCACCACCGCCTGCAGCCACACTGGAGGGCTGCGGGAGTGGGTGTGCTGGGGAATACAGCTCAGGCACCCTGCCTGGGGAAAACAGAAGACAGGAACTCCACAGGGTGACTTAACAGAATTGAGGGTTCTGCACACTTTTAGGCTGAGGGGAGGCAGACAAAATTGCAAAGGAGAGAGACAGCTGACCAGGACTGGGGACATTCCCAAGAGAGGGCATCCAAAGGCAAGGCTGAGAGGACTTGTGAGGTTTCAGTGCTGGTGAGATGTCTATGTGGACGCCCAGGTTCCTAAAAACAGTGGCACTTGTTGCAGGAAGACTTAAGGAGCAGGTGCTTTCTCAGAGACCGACGGAGAAGTGATCTGTAACAGGCAGGCATCACAGAGCTAAAGGGGAGGGGGGCGAGGGTGAAGGGCCTGCCGCCCCAAGGAGCTTGGGGTCAAGGAAGGGGTGGCAGGGCCTTGGACTCCGTGTGAAAACGCTGTGGGAGGTGGGAAAGAGGCCTCTGTCCTGGCCTGCAAAACCCCAACTGCACAGGCTGTTTTAGCAGCACCCTCAAGCCACCTGCCTAACGCTGCTCTCCCACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGCGCCCTGCACTGGCTGGGTGCCTGGATCAAGGAGGGCGGCCAGCGGCTGCTCACCTCCAGGGACAGGAAGATCATGTGTGCAGAGCCCCCGCGCCTGGCGCTCCAGAGTCTCCTGGACGTATCCCACAGCAGCCTCATCTGCATTCCGCCCTCTGTCCACGTGCAGCCGCTGGAGCTCACAGCCAACCTGGGTGAGGACCTGCGGGTTGCCTGCCAAGCCTCCGGCTACCCGCAGCCATTGGTGACCTGGAGAAAGGTGCCCCAGCCTCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGGTTGCTGGGCCTGGGCGGACACTCGGCATCCGACACGGGCAGCGGCATGCTCTTCCTCAGCAACATCACGCTGGCGCACGCCGGTAAGTACGAGTGCGAGGCCTCCAACGCCGGCGGCGCTGCCCGCGTGCCCTTCCGGCTCCTGGTCAACGCGTCCCGGCAGCAGCCGCAGCAGCCCGCGCAACCGCCGCCTCCGGCCGCCCGCCCCGCCGGCAGCGAGCCCCGGCCCGAGGCGGGCAGCATGGCCTTCCGCGCCCTGGGCGTGGCCACACAGACGGCCATTGCGGCGGCCATCGCGCTGCTGGCGCTCACGGCGCTGCTCCTGGTCGCCATGATCTGTCGCCGGCGCCGCAGGCGAAAAAAGGCGCGGGGGCCTCCGGGGGAGGGAGCGCTGTTCGTCAACGACTACTTGGACGGCCCCTGTACGTTCGCACAGCTAGAGGAGCTCCGCGACGAGCGCGGCCACGAGATGTTCGTCATCAACCGCTCCAAGCCGCTCTTCGCCGAGGGTCCGGCGGAGGCGCCCGCTGACTGCGGCCCGGAACAGGGGGCGGGGCCGGGACTCCGCGTGCCCCCGCCGGTCGCCTACGAGATCCACTGCTAGGGCCGCGGGCGCGCGGATGACGTGGGCGCCGGAGATTGGCCGGTGCGGCCTCGCGCATGCTCCGTCAGTAAAGGTGGAAGCCGCGCAGTGTGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402:ENST00000529415:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.293
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(93.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAGCAGGAACCAGCT
R:
TTCTCCAGGTCACCAATGGCT
Band lengths:
358-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development