RnoINT0086833 @ rn6
Intron Retention
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117779733-117782734:-
Coord C1 exon
chr7:117782566-117782734
Coord A exon
chr7:117780754-117782565
Coord C2 exon
chr7:117779733-117780753
Length
1812 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTCTATTCTGCCCCACACAGAGA
3' ss Score
6.26
Exon sequences
Seq C1 exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAAGACCAGGCCCTGGCTGGGCTTTCCTCCCTGGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
Seq A exon
GTAACTCTTCTTTGGCATGGCTCTCTTCTGGGTCCACAGCTGCATCAGCAGGGAGAAGCAGGCTTAGGTACACAGTGGGTTCCTGCTGTCAGTGGTGGTAGGAACTGAGGCAGATCCACACTGTGGCCATATCGACCTGGGGAGTTCCCTTAATTTTTACAGTCCCTGACTCAGGTTGAGCCACGTTCTACTTCACTGCTGAAAATGATTTCAGAATAAAACAAGATATAACAGAGTTTGGATTTATTAAAAGGGATGTTAATATAGATTTGAAACATAAGGGTTAAGACAGGTCCTGTGGAAAGAAAACACCCAAGAACGTTGATGTGGGTTTTACAAAGTAAGTGCCTTTATGATAGCCATATATACTGAATTTGATGGCTTCAGAAATTACACCTTAAAGGACTATTAAAGAACTTATGGGGCTCAAGACCCCATAAGAACAACAATGTCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCGCAGTGAACTAGACTGTTGGGGGGAGGGGGACAATGGGGGGAGGGTGGGGAGGGGAACACCGATAAGAAAGGGGAAGGGGGAGGGGAATGTTTGCCCGGAAACTGGGAAAGGGAATAACAATCGAAATGTAAATAAGAAATACCCAAGTTAATAAAGATGAAAAAAAAAGATAATACAAAAAAAGAAGAGAGACAATTAAAAAAAACCAGCTTATGTGAGCTGGGCATAGTAGCACAAACCTTTAGTTCCAGCACTTGGGGGCAGAAGCAGTAGGATTTCTGAGTTCAAGACCAGCCTGGTCTATAAAAATTAAGTTCCAGGATAGCCAGGACTACACAGAGAAACCCTGTCCTGAAAACAAAACAAAAGCTTAAGTGAGATCACAGGGTGGTTCCTACGCACTGGACAGGGATACAGAAGATAGTGTAAATTCCCAAGTAACAAGGGTTTTCAGGGAAGATGCCCTTAGTGAACAAAGGTTTAGTCTTGTGATTACCCCAGAAATTCCCTACAAAAAGAGCAAGGCCATTCTTGAGGATCACGGATAGATGCTCAGCCTTGCCTATGGTTCACTGCTGTTTTAGTAATCTTCTCAATATAAAGGGAGTATTGTTTGGTTGGCAATTTTCAAAGTAAATGTGGATATCACTTGGTGAGAGGCCTCAGTCAGAGTCTATGAGAACTTGTTTCCCTTCCTGTGCCACTATAATTCCCCTTTCCTATCTTGCTTCACTATGGCAGCCTGTGGGCATTGCTTGGCAGGGCCACACCAGAACCCTCAGCCTTGGGAAGGGACTACAAGGGAGTGCTGTAAAAAGTTACAGCTTATGCATCTATTAAACTTATCAGAGCAACCTAGCAGGACTGAAGCTCTTTTTTGTTTTGGTTTTCAACACAGGGTTTCTCTGTGTGTAGGGAATTGAGGCTCTTACAACTTGTCATCAGGGGGAGGCAGGCAAAACTGGAGCGAGCTCATTTGACAATAGGGTTTCAGTGCTGCTGGAATATACGGGGATGTGGCTTGCAAAACTGGGACTTCAGAGAAGCTGGTGCTTTTTCAGGAACTAGGACCACACACATTTCTAGGAACTTGGAGTGAGGGAAGAGGTGACAAAGGTTCTGGAACTCTATAGGCATCTAGAAGAGGTAGATAAGAGCTTCTGTCTGGACTAGCAGAACCCACCTACCTAGGCTCTATTCTGCCCCACACAG
Seq C2 exon
AGAACCCATGGCGTTGTGATTGTGCCCTTCACTGGTTGGGCTCTTGGATCAAAGAGGGGGGCCGACGGCTGCTGAGCTCCAGAGACAAGAAGATCACATGCGCAGAACCTCCACGCCTGGCGCTACAAAGTCTGCTGGAAGTATCTGGGGGTAGCCTTATCTGCATTCCTCCCTCCGTGAACGCGGAGCCCCCGGAACTCACAGCTAATCTGGGAGAGGACCTGCAGGTTGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTGGAGAAAGATGCTCCAGCCTCGCGATGGTAAGCCTCAAGCACAGGTCCAGCTGGAAGGTGGGGCACCAGGCCTGGGCGGGCATGCCACCCGTGACACCGGCAGCGGCATGCTCTTCCTCACCAACATCACACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCACCAATGCTGGTGGCAAAGCGCGGGTGCTCTTCCATCTACTGGTCAACGCATCCCGGCAGCAGTCCCAGCAGCTACCCGCGCCGCAAGCCCCGGCTACACGCCCGGTGGGACAAGAACCACAACACGAGGGAGGCAGCATGGCCTTCCGAGCGCTGGGGCTAGCAACGCAGACAGCGATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATGATCTGCAGACGCCGACGTCGGCGGAAAAAGATGCCTGTGCCGTCGGGGGAAGGCACCCTATTTGTCAATGACTATTCGGATGGGCCTTGCACCTTCGCACAGCTCGAGGAGCTCCGTGATGACCATGGACACGAAATGTTCGTTATTGACCGGTCCAAGCCCCTGTTCACAGAGATACCGCCGGAGGAGCCCCCGGAACACAATCCTCCCGAGGGCCTCAGGTCTGGGACACGCCTCCCTACACGTGTGGCCTATGAGATCCATTGCTGAGCTTGCGCGTACTAATGACATAAGCACTGGGGATTGGCCGGTGCAGAACCGCGCATGCTCAAAGTAAAGTTGAAGCCAGGCTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204:ENSRNOT00000030517:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(93.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCAGCCTACAAGTGC
R:
GACCTGTGCTTGAGGCTTACC
Band lengths:
350-2162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]