DreINT0090973 @ danRer10
Intron Retention
Gene
ENSDARG00000101704 | lrrc24
Description
leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
Coordinates
chr2:51461271-51465702:+
Coord C1 exon
chr2:51461271-51461439
Coord A exon
chr2:51461440-51464527
Coord C2 exon
chr2:51464528-51465702
Length
3088 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TATTGTGTTTGCTCTCCTAGATA
3' ss Score
8.83
Exon sequences
Seq C1 exon
CGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTG
Seq A exon
GTGAGAAACTTTCTGGAAAAAAAAATGCATCAAATTTATTAAAAGTGACAGTAAATCATACCTGCCAATTGGGCTGCACAATGGGGTATATGCCAAAGCATGCTAATAGGACTTTTAATTTGCCAGTAACCTGGGTTAAGCGCTTCCGGAAAAACTGTTTGCCATTGCAAAAACGGCCCGTTTAAGGTCTGTTTTCTTTAAAAATCTGCGATTTCTAAAGGCTGAGTGATATCCGATATAAAGTGGGTCTCAGATTGTACAAGAAGCCCTGCATTAAATTACATTTTCCCCCGTCATGTCTTTAAAATATAAGCATTAATTTTAACCCAGTATGGAGCTTCTGCGCTAGCTTCTGCGCTAGCCTGCCGATTCTGACAGGTGTGTGCGAGTAAACAGCCTTTTGTCTCGTTTTACGATTGAGCAAATAAATGAATGCCAGAGTCCATTTAACTATTTGTATTTTAACTACATTACAACATCAATGCTGTAAAAGGAATCGTTTAAAATGGAAAAAAAAAGTAACGATAACAGGTAACCGGAAGTTTATCAGTATGGGAACAACACTAGCTCTGCATATACCCTATACATCGTTTGAGCATTGATATCATAATGTGTGTATCTGTAATAGTCACATCGCAGGATTACATTATTTATTCAAGATTTAAAGATGAAAGACATTAAATATTATTATTTTAAAATAATTTATACAATGATGACTATGTTATTTTATGTTGGACTGTTTAATTTCTCATGTATACTGTTATACGCTCCAGAAAACCATTAAGCACAGTTTATTTGACTTTTATCTCTGCGCTTTTGTCCTTATATATGCTTGCAATTTATTATGATTTATGGAAATGCACCGCATTGAAAGAGACCTAATTAGGGCTGGGTGATACAGCATGGTTTCTGCTACATTCATTCTTCCATGGCGGGGCGCCACACCAAAATTCATCCTGCCAAGGCTGAATTAACGTTACAGCTTCTCATTCAAAACATTCAGTCGTTGTTTTTTTTAAAAACGGGTAATTATTGTACCACAACATATTAAAAGGTAAGTGAATCATAACAGTGAAACTTTTCTGTAATCATAATAGGGCTGTGCATTATTTGTTTATTATTTGTAACCCTTAAAGGTGGCATGCTGACTGACTGACAGGGCTGCGCGATGAATGAGGCCAGCAAACACGACGTAGCTTTCAGTTAAGATGAACATAATTATATTTTATTTGATAGATAAAGGTCTATGGTTCTTCATACAGTAATATCTTGCTGGAGTTTATAGATGTTTCACTTTACTTCAGGACACATTAATACCGCTCTGTCTATTGGAAACATTTATAAATATTCCTAGCAAATCCAAAAAATGTTGGAGACATATTTGCAACAATTGCATTAATCGCACTTCAGCAGCGTTTATTTGAGAGCGCACAAGAAAATCTGCAATTGAGCAGCGTATATTTGAGGGGGCGTGCAAGAAGTTTTGTGCACGAACAGTCGAAATTGGTGCAAAGAGATTTGCATGCCCGTATTACATAAATGCGATCTCAACGTGTAATACTGCGCTCAAAACATTTGTCATTGATGCCACAATTAGTTGGTAGATCTGTGTAAAAGATCTGCCACCACAGCTGGAAAAAAATCCTAGAGGAAATACGGTACAGGAAAAAAAATTATCACGATATAATGTTTAATATCATTCAGTATCGAAAATGATTAAATATTATTTCACAATACATTCAGGAATATTAGGATTTTTAATATGTACTCATTTTATTTTAAATTATCAACATTACTAAGGCAAATAGTAGTAATAGTCAAAAACCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACATTGGTTACACAATGTAAATGCTACAACGTTCCCCAGCGTCAAGCTCCATTAAACGGGGGGTTTTAATCTCTACCATAAACATCAGTGTTTATATCTGAACTCTAAACTGTTCTCCCAGTACTTCTGTGTTATTTAATTGTTTGTAACTAACTGAAAAAAAGTGTAAAAACTGAATCTCTCTCGATCAGATTTCAATGCAGCGCTTTGAAGGTTTATTAAACATCTGCAAATCATTATCATTTATCATTCATGTTGCGCCGGTTTGAATTGCGATCATAATCTTTTAATGTTTAATCATGCAGCTTTACACTGAATGCATTAATGCAGGCTAAACAAACAGTGACAGAAAACACCTTTAATTAATAGCCTAAGAAAACATTTAGGTATGTCCCACAACTTTTCCGTCATCATTATATTTAACAGGGAAGCCAAAAGGCTTTCATCCACATGATTTGAATGACACTGGAGGCGATCTCTCTGCAATTGTTATAAATGTTGGATTAACCTATGAATTCAAAAAAACTCATTAATCAGCGGGTCAACGTGTGTTCCGAACTTTGGATCCTAATGGATCACGGATAAACCATGATCCATTACACCCCTATACAGAACTCAACGTGTGCCAGCTATCAGCACTCTTCAATATCTTCTATAATGTTGAACAAAACAAACTCATAAAGGTTTAAAACCACTGGAGTGAGAGTAAATGATAAGATCATTTTGATTTCCACTATTCTACAATATCACATTGTTAATACTAAACTAATTTACAATCAGGAAAACCTACATATTATATCTGTGAATCAATGCAAACTGCTAGATGTAATAGCAATGCATTTGGTTTGCACTGGTGCATATACAGTTAGTAATTCCAGCCCTGTTTTCCTCTGTCTAGATTTTTTCTCTCAAGAAAAGCGCCCCATGAGATTACCTCATAAATATTAATTAAATAACGTTTCCTTTGGTAGATAACCTTTAAGTAAACTAATTGATATTCATGATCCAATCCTTTACCACAGTACACTTCTGCAATGTTGTACGAGTACTGCAAAAGCACCACGCTGACATTGGATTTAGATGTCAGATCCGGCTTTACATTTGCGCAAAATATTTCTGTTTGCATCCATATTTTATAAAGCAGTAGTTTTTTAGAGGCTTATATTGTGTTTGCTCTCCTAG
Seq C2 exon
ATAACCCATGGCGCTGCGACTGCGCTCTACACTGGCTGCGTGGCTGGATAAACGAAGAAGGTCAGAGGCTTTTAAGCTCAGCCGAGCGCCGGATGTTGTGCGCCGAACCTCCGCGGCTTTCCCACCTCAGTCTGGTCGAAGTTCCTCCAAACAGCCTTGTTTGCATCCCACCCGTGGTCCAACTAGAACCCAGCCATTTGACAGTACGTTTAGGGGAGAGTCTCCGAGTGTCCTGCCAAGCGTCCGGATACCCACAACCACAAGTCACCTGGAGGAAAGCGTCTCACGGAAAAGCCCAGCTGTCTCCCAGAGGTCTGGTGCAGGAGGTTGGGATGGATGGAGACACAAGGAATGGTGGTAGATTGGTAACAGCGAGGCCTGGAGGAAAAGGAGGACCATCGAGTCATGGACCGATCAGAGGAGGAGCTGATGACGGAGCCGACCGGGAAAATTTCGATCCTGATACAGGAAGCGGAATGCTATTTCTTAGTAACGTCACAGTGGCGCATGCGGGACGCTATGAATGTGAAGCGTGGAATCCTGGCGGTGTCGCTCGTGTGACTTTTCACCTTTCGGTGAACATGTCTTCATCGTCATCCCGCTCAGAAATCTGGCCTCGACTGCATTCCTCATCTTACTATCATCCTTCATCGGTGGATGTGAGTCAGGAGCCGCTGTATGAACTCGAAAGCATGGACTTTAATGCGCTGGGCACTGCTACGCAGACGGCAATCGCAGTGGGAATCTCTTTGCTGGCGTTGACTGCCCTTCTGCTGCTCTGCATGATCTACAGCCGACACCGACAGAGGCAGAAAGAGGAGGGCGGATATGGAGCTAGCAAAGAGGAAAGCATCCTTTATGTCAACGACTACTCTGATGGTCCCACCACATTCGCTCAGCTTGAAGAGTACCGGGATGAACGGGGCCATGAGATGTACGTGTTAAACCGCGCCAAACCGGTGCTGGCTCCGCAACCGATGTGCATCCAACAGGGATCTGCAACTCTAAAGGCCAGCGAGTGTCAGGGTGTGTTGACCCCAGGACGAGCCGGAGGGATCGGACCCCGCAGGGCTCCCGCAGAAGGGGGAGAAGCACCTCCGCTTGATCCCGAAGGGCTGTTCATGAACCAGAGCTTGCTGTTTGATACGCAGATTGCGTATGAGATTCACTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101704:ENSDART00000167430:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(93.3=98.2)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=1.9),PF0767911=I-set=PU(42.0=44.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]