Special

HsaINT0096752 @ hg19

Intron Retention

Gene
ENSG00000177021 | LRRC24
Description
NA
Coordinates
chr8:145747761-145749662:-
Coord C1 exon
chr8:145749494-145749662
Coord A exon
chr8:145748794-145749493
Coord C2 exon
chr8:145747761-145748793
Length
700 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTAACGCTGCTCTCCCACAGAGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
Seq A exon
GTACCTCTTCCTCGGAAAGCGTCTCTGTCTGGGCCACGGTGTTGGCAGTAGGGAGCAGGCTCATGTGTGGAGGGGCTCTGACATCAGGCAACTGGGCAGCAGTCTGGAAGGCTGCACCACCGCCTGCAGCCACACTGGAGGGCTGCGGGAGTGGGTGTGCTGGGGAATACAGCTCAGGCACCCTGCCTGGGGAAAACAGAAGACAGGAACTCCACAGGGTGACTTAACAGAATTGAGGGTTCTGCACACTTTTAGGCTGAGGGGAGGCAGACAAAATTGCAAAGGAGAGAGACAGCTGACCAGGACTGGGGACATTCCCAAGAGAGGGCATCCAAAGGCAAGGCTGAGAGGACTTGTGAGGTTTCAGTGCTGGTGAGATGTCTATGTGGACGCCCAGGTTCCTAAAAACAGTGGCACTTGTTGCAGGAAGACTTAAGGAGCAGGTGCTTTCTCAGAGACCGACGGAGAAGTGATCTGTAACAGGCAGGCATCACAGAGCTAAAGGGGAGGGGGGCGAGGGTGAAGGGCCTGCCGCCCCAAGGAGCTTGGGGTCAAGGAAGGGGTGGCAGGGCCTTGGACTCCGTGTGAAAACGCTGTGGGAGGTGGGAAAGAGGCCTCTGTCCTGGCCTGCAAAACCCCAACTGCACAGGCTGTTTTAGCAGCACCCTCAAGCCACCTGCCTAACGCTGCTCTCCCACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGCGCCCTGCACTGGCTGGGTGCCTGGATCAAGGAGGGCGGCCAGCGGCTGCTCACCTCCAGGGACAGGAAGATCATGTGTGCAGAGCCCCCGCGCCTGGCGCTCCAGAGTCTCCTGGACGTATCCCACAGCAGCCTCATCTGCATTCCGCCCTCTGTCCACGTGCAGCCGCTGGAGCTCACAGCCAACCTGGGTGAGGACCTGCGGGTTGCCTGCCAAGCCTCCGGCTACCCGCAGCCATTGGTGACCTGGAGAAAGGTGCCCCAGCCTCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGGTTGCTGGGCCTGGGCGGACACTCGGCATCCGACACGGGCAGCGGCATGCTCTTCCTCAGCAACATCACGCTGGCGCACGCCGGTAAGTACGAGTGCGAGGCCTCCAACGCCGGCGGCGCTGCCCGCGTGCCCTTCCGGCTCCTGGTCAACGCGTCCCGGCAGCAGCCGCAGCAGCCCGCGCAACCGCCGCCTCCGGCCGCCCGCCCCGCCGGCAGCGAGCCCCGGCCCGAGGCGGGCAGCATGGCCTTCCGCGCCCTGGGCGTGGCCACACAGACGGCCATTGCGGCGGCCATCGCGCTGCTGGCGCTCACGGCGCTGCTCCTGGTCGCCATGATCTGTCGCCGGCGCCGCAGGCGAAAAAAGGCGCGGGGGCCTCCGGGGGAGGGAGCGCTGTTCGTCAACGACTACTTGGACGGCCCCTGTACGTTCGCACAGCTAGAGGAGCTCCGCGACGAGCGCGGCCACGAGATGTTCGTCATCAACCGCTCCAAGCCGCTCTTCGCCGAGGGTCCGGCGGAGGCGCCCGCTGACTGCGGCCCGGAACAGGGGGCGGGGCCGGGACTCCGCGTGCCCCCGCCGGTCGCCTACGAGATCCACTGCTAGGGCCGCGGGCGCGCGGATGACGTGGGCGCCGGAGATTGGCCGGTGCGGCCTCGCGCATGCTCCGTCAGTAAAGGTGGAAGCCGCGCAGTGTGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177021-LRRC24:NM_001024678:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.293
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAGCAGGAACCAGCT
R:
TTCTCCAGGTCACCAATGGCT
Band lengths:
358-1058
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development