MmuINT0092937 @ mm9
Intron Retention
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76545706-76548521:-
Coord C1 exon
chr15:76548353-76548521
Coord A exon
chr15:76546737-76548352
Coord C2 exon
chr15:76545706-76546736
Length
1616 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTCTATTCTGCCCTACACAGAGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAGGACCAGGCCCTGGCTGGGCTTTCCTCCTTAGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
Seq A exon
GTAACTCTTCTTTGGTATGGGTCTCCTAGTCCAAAGCTGGCCCAGCAGGCAGAAGCAGGCTTAGGTACACAGTGGGTTCCTATTGTCAGCCGTGGTAGGAACAGAGGCAGATCCACACTGTGGCTACATCAACCTGGGGAGTTCCCTTAATTTTTTACAGTCCCTGACTCAGGTTGAGCCAGGTTCTACCTTACTGCAGAAAATGATTCCAGAATAACCAAGATTTAACAGAGTTTGGATTTATTAAAAGGGACGTTAAGATAGCTTTGAAACATGAGGGTAAGGACAGGTGCCGTGGTATGAAAACACACCAATGAGCCATGTGGGTTTTACAAAATAAGTGCTTTTTTTTTTTCTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGCACAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGTCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCACTAAAGGTGTGTGCCACCACTGCCCGGTCAATTAAGTGCCTTTATGATAGCCATGTATACTGAGTTTGATGGCTTCAGAAATTACACCTCAAAGGACTATTAAAGAACCTATAAGAGCCAGACATGGTAGCACAAGCCTTTAGTCCCAGTAATTGGGAGACTGAAGCAGAAGGATTTCTGAGTTTGAGACCAGCCTGGTCTATAAAAATTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTCTTGAAAACAAAACAAAGAAAAGCTTCAGTGGAATCATTTATAGCGTGGGTCCTGCACATTGGGTAGGGATACAGAAGATAGTGCATGCTCCCAAGTAACAGGGGTTGCCAGGGAACGTGCCCGTACTGTAAACAAAAGTTTAGTCTCGTTACTACCTACAAAAAGAGCAAGCTCATCCTTGAGGACCACAGATACATGCCGAGGCCTTTCCTAGAGTTCACTGCTGTTTTAATATTCTTCTAAATGTAAAAGGAGTATTGTTATGTTGGCAATCTTCAAAGTTAATGTTGATGTCACTTGGTGAGAGGCTTCAGCCAGATTCTATGGGGACTTGCCTCCCTTCCTGTGCCCCTATATTTTCCCCTTGTCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACACAAGAACCTCGGCCTTGATAAGGGACTACCAGGGAGTACTGTTAGGAGCTACAGCTTATGCATCTATTTAAGGAAACAAGGTACAAGTTCTGCAGAGTAACTTAACAGAATTGAAGCTCTTTTTTGTTTTGGTTTTCAAGACAGAGTTTTCTGTGAGGCACTGGTTGTCCTAGAACGCTGTGTGTAGAGATTTGAGGCTCTTCTAACTTGTCATCAGGGGGAGCCAGGCAAAACTGGACAGAGCTCATGTGACGACAGGGTTTCAGTGCCGGGCTGAGGGATGCAGAGGCTTGCAAAGCCAGGACAGGAGAAGCTGACGCCTTTTCAGGAACTGTCATCACAAACATTCCTAGGAAGTTGGAGTGAGGGAAGAGGTGACAAGGGTTCTAGAACCCTATAGGCATCTGTAAGAGATAGATAAGGGCTTCTGTTTGGATTAGTAGGATCCATCTACCTAGGCTCTATTCTGCCCTACACAG
Seq C2 exon
AGAACCCATGGCGTTGTGACTGTGCCCTTCACTGGCTGGGCTCTTGGATCAAAGAGGGGGGCCGACGGCTTCTGAGCTCCAGAGACAAGAAGATCACATGTGCAGAGCCCCCACGCCTGGCGCTACAGAGTCTACTAGAAGTATCTGGTGGTAGCCTCATCTGCATTCCCCCCTCTGTGAACGTGGAGCCCCCGGAGTTTACAGCTAATCTGGGGGAGGACCTGCAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTGGAGAAAGGTGCCCCAGCCTCGCGATGGTAAGCCTCAAGCCCAGGCCCAGCTGGAAGGTGGGGCGCCAGGCTTGGGCGGGCACGGCACCCGAGATACTGGCAGCGGCATGCTCTTCCTCACCAACATCACACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCGCCAATGCAGGTGGCAAAGCTCGAGTGCCCTTTCATCTACTGGTCAACGCATCTCGGCAGCAGTCACAGCAGCTACCTGACCCGCAAGCCCCAGCTACACGCCCTGTGGGACATGAACCCCAGCATGAGGCAGGTAGCATGGCTTTCCGAGCCCTGGGCCTAGCAACGCAGACAGCGATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATGATCTGCCGACGCCGACGCCGGCGGAAAAAGGTGCCTGCGCCGTCGGGAGAAGGCACCCTATTTGTCAACGATTATTCGGATGGGCCTTGCACCTTTGCACAGCTCGAGGAGCTCCGTGATGACCATGGACACGAGATGTTCGTCATTGACCGATCCAAGCCCCTGTTCCCAGAGGTACTGCCTGAGGAGGCCCCAGAACACAATCCTCCCGATGGGCTCAAGTCTGGGCTACGCCTCCCTACACGTGTGGCCTATGAGATCCATTGCTGAGCTTGCGCGTACTAATGACGCAGGCACTGGGGATTGGCAGGTGTCGGTGCAGCTCCGCGCATGCTCAAAGTAAAGTTGAAGCCAGGCTTCTCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-Lrrc24:NM_198119:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.331
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(93.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCAGCCTACAAGTGC
R:
CTTGAGGCTTACCATCGCGAG
Band lengths:
342-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: