BtaINT0088382 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107373814-107378553:-
Coord C1 exon
chr3:107378464-107378553
Coord A exon
chr3:107373892-107378463
Coord C2 exon
chr3:107373814-107373891
Length
4572 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTTTGTTTGTTTGTTTGCAGCCC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTCCGCAAGCACATAAATGACCTTTATGAAGACCTGCGGGATGGCCATAACCTGATCTCTCTGCTGGAGGTCCTCTCGGGCATCAAACTG
Seq A exon
GTGAGCTTCTCTCTCCTCCTAATGGGTGACTTCCCAGGTGTGGCCCTATTAATGATATAGGTCCATCGTGTTGAGTGCTGGGGAGGTGGCTGTCACTTCTGTTACATGGGAGGAAAAAGTAGAAGAGGTGATTGCTGGACTTTATTTCTAACTCAGACTTAATGCTTTACAAATGATACCAATTCAGTTCAGTTCAGTCGCTCAGTTGTGTCCAACTCTTTGCGACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCATCTCCCGGAGTTCACTCAGACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCATTGAGTCAACTCTTTGCATGAGGTGGCCAAAGTACTGGAGTATCAGCTTTAGCATCATTCCTTCCAAAGAACACCTAGGGCTGATCTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCTCTCAGCTTTCTTCATAGTCCAACTCTCACATCCGTACATGATCACTGGAAAAATCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTTATAACTTTCCTTCCAAGGAGTAAATGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCTCTGTTTCCCCATCTATTTCCCATGTAGTGATGGGACCAGATGCCACAAATGATATAAGTTCATTTTAATTTAACCTGATTTGTCATATATTCTTATTTCTTTTTTTTAATTCTTTTAAAAAAATTCTACTTTCTTGATGGAATCCGGTATTGGTTCTATTACTTTTATATTTGCATGATTTCTCCTTGTTCTTTATCTATTTATACATGCTAGTATTTCAGGAATAGTAGATTCTCGCTTTAAGATTTTTTAATAAGGCGTGTTTTTCTTCCTACAATGTTATTTCTAGTCTACACAGATTCCTCCTATTTTTCCTTCTACTGTGAATTACTTTATTTTCTATATTCAACAAAGAGCTGAGATTTACATGTAAAAGCCCAGGTGTTTAGAGTCATTGTTTCCCAAACGGCCTAACTTCCTCCCTTCTGGAATTCATTGTCTGTCACAGGTTTGAAGAAGAGCTGAAGTTGATGTCTGAGCATAGCCCCAGATGCTGTACATCTGGGCTCCTTGGATAATTAGATAGGCCTGCATCCTCCCCATATGTATTAAATGTGGCTTATGGAAACAGTTACCTGTCTGAGGACAAAGCCTGTCCAAACCTCTTGGCTTATCAGCTCTTGTCCTCACTTTGTTGAAGGGATCAGCGTGGCCTCACCATGGGCTCGTTGTTTCACATGTGGGAGCCTAACTTGAGCCTGTGATTCTGTGCAGCTCCTGCTCTGTCTAGAGTGTTATAGACAGCATGCTTTTTCGTTTAGAAAAGGCCAGGGCTGAGTGTGGAGACACCTGTGAGAGGTGCGCCCTGGAGAGGAGCACGGCTCAAGCAATCTATGGAGGGAGCCGGCACACTCTCTTTGGTGAATTCTAGAGCAGGATTTGACACGTTAGATTTCTCTCCCTAAGTAATAGTCAGCTTCTTCCAGGATTGAGCTTGGCTTTCCTGGGGTCCTTTGTTTTGGTTTCTTTTCTTTTTTTTTTTAAAATAATAATTTTTAATGGCCTAAAATTGACAGATGCTTTTGTTGACATAGCCAGTACATATGAATTCTAGTTCTTCTCTGGCCCTCATTTATAAATCTCCTAAGTAATCAGAATTTTACTTTCACTGTGTTGGACTTAAAAGTGCTCACGAAATTATATTTTGGGCAATTTGGCTGGTATATTTGATGAACTTGTAGTGATTTTATATTGAAAAGTGATCCTTTTCAGTGATATTGCTTACAAAACAGGTTAAAGCCACTCCTATCTGATTTCTTTCCCTAGCCTTTGAAGACCTACAGGTGTTTATGGAGATAGTTGTAAAATAATCATCTTTTCACCAGAAACCACCCAAATATCTCTTTCATATGCATATTTTCATCATGCATTCTCCCTTACTTGATTCACAAAAGTAGGGAGAATGGATGGCCTGTGGAGAGTTAAAGCTGTGTTTGAACATAAGAAGTGTTCAGTATAACCATCTGTTCTGGTCTTAATTTTGTTTTGCATTTTTGTGGAGGTGGGAGGGTATTTTCATATTTATTTTCATCTTTTTTTTTTCCTGCGTTCATTTCCTTTTCATTTATGTGTTGTGAATTTCCTGCTAACTCTGTCACGTCTCTGCCTTGGTTGGTGGCCAAAGGAGCCGGCAGGGCTGAAGACCCTCCGCCTGGTGAGCATGCCCTCCTGGCGCCGTGCAAACAGCGAGGAGCAGGAGGAGGAAGATGATGATGATGTCGTAGGTCCTCCTGGGGACACCAGCATCCCAGACGGCGCTGCAGGGCCATCAGAGGGTTTGGGGTTCTCTAGGTCCCCAAGCAGCTCACTTACCAATTGCCTTCTTCCCTGTCCACCTGGGAATTTGGGTCCCAAAGAAAGTGGTTAAAACTAATTGTGCCTCGTGCCACTGTTAGATGATCCCAGGGTGGGAATTGTTTTGCTTATCTGCGAGTAGCTGGCACAAAAAGAATAATGATGTTTGGCAGCGTCAAGTCCGGTTGTGACTGGAGACCCATGCCTTTCTGGTGGCCTTGCTGTGTTGTCTGAGTCTAGATTGCAGAACTGTGGAAAGCTTAGTTGACAGCATGTCAGTTGCTCCTTCTGACTCCACACTCCAGACTAACGGAGACTTGCTCGCCACCTCTCTGGCTTCCAGGTTCTCAGCACACAGCGTGTCATTTGTTTTCAAAAGAGCCTGTTGTTTGCAAACCACTCACTGCATGGGGATACTCTGCCTTCGTCAATAACATCTCTAGTTGCTATAGAGGACAGAGATTTAACTTGCATGTTCTCAAGGGTATTTTTGGTGGGGAGTACTTAGGCGTAAAGATTAGAGTGTGTAGGAGGGCCATTTTCTGCTTGCAGACCCTAATTACAGCCTGTGATTTTTCTCCGGAAATAGAGATCAGGCAGTGTCCCCATTCCCTGTCCTCTTAAAGTCATCTTTTCATCTCATTGATCTCCCCTCCAATTGCCTTAGCATCTTCGGTTTCACAGGCTCTGTCATCTTCTAAGCCATATTCACAATTAGTTCAGCTGGAATGACTGAGAAGAGATTCTTACTAAGAAGGTTTTTCCTAACACTCTAACTTACAAAGTTATCCTATTGCACAGAGAGGCCTCACCTACTCTGTCAATTACCCTGGTTTGGAAGTTTTGCTTAGAAGGATTGAGGGACCCCCTCAGAGATGCTTCCACCCCGTCCCTCCACGTGTCGGGTTACTTTTTGCCCATCAACCTGGGGCAGTGTTTCCTCTGTGCAGGTGCCCACAACAGAGCTACCTTGTATTTTATTGGCCTTTAGTTAGTAACATTTTGATATTTATAAATGAATTGGGTATGATCTAGTGAGAGTGATGTCTTAGTCCCAATTGTACTGGAGGGGGGAACCATTGGAAAGTAAGCAGGAGAAGACACTCCAGACGTAGATAGCCATCCCTGCCTGTGCTCACTGGAGAAACAGCTTCCACACACTTTTGGATAGATAGGACTTGAGCCTTGGATCCGGGAGGTGGGCGCTGGCGACACCCACCTGGGTGGAGCGACACCAGAGGCGCTGGGTGGAGGTGGGCTCTCCACTGTGGCTCGTGTGACATCCAGGATTGAGCGGCTGGCAGGAAATACCTTTCTTTGGAGTTCTGTGTTGAAGAACCCTACACCATCGAGGTCTTGTTTGCTCTGGGTATTTCAAACTGGAGTAAAAGGTGGCTTTCCTACTTTGTCTTCCTAGGAAATAGGCTGCTTCTTGACTCCTGCCTTCCATTTTAGATTTTTTCACTTACTGAGCATGTGTAACTTCTCATTCCCTAGTGTAAAATTGACTACCTGTAGTTTCTTTTGCCAGGTTGTAATATGGTTGGCACTGTCCATTACTGAGCAACCTGTAATTAGGCCTTTTACCCTTTGCTTACTGTAACATTTAACTGTGGTTCTGGGAGCCATAGAGCCAAATCTTTGTTTGCATTAACCTCACATCCAGAATCGAGTTCTGCCAATATGGCTGCAGAGGAACCTGTAGAGAAGCTGCGGCACTGCTTCAGCATTTGCATTCAAACGTGCCGTGTGTTCACGGGGATCTGAGTGGTAAACGAGGCGTTTGGGGGCCTCAGCGAGCATGGTGAAAACTCACACAGGTCCTGCCTGGAGGGGTGCTTTGTGTGACGCTCCCACGCCTGGCTTCAGTCGTGGGAACTCTTTGTGGTCTTTTAGTTCTTGAAATGAAAGCAGAAAGGGATCTGCGTGGGTAAATTGGTGTCACGGAAACAAACATCCCTTTTGTTTGTTTGTTTGCAG
Seq C2 exon
CCCCGGGAGAAGGGCAGGATGCGTTTTCACAGGCTGCAGAACGTGCAGATTGCCCTGGACTTCCTAAAGCAGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024:ENSBTAT00000033270:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]