BtaINT0091664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27880135-27882331:-
Coord C1 exon
chr7:27882085-27882331
Coord A exon
chr7:27880256-27882084
Coord C2 exon
chr7:27880135-27880255
Length
1829 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GTCACATGTTAATCCCTCAGCTG
3' ss Score
5.38
Exon sequences
Seq C1 exon
CCTGCGACGGTGATCACTGGGGACCTCACTGCAGCAGCCGGTGCCAGTGCAAAAATGGGGCACTGTGCAACCCCATCACAGGGGCTTGCCACTGCGCTGCGGGCTTCCGGGGCTGGCGCTGTGAGGAGCGCTGTGAGCAGGGCACCTACGGTAATGATTGTCACCAGAGATGCCAGTGCCAGAATGGAGCAACCTGCGATCATGTCACGGGGGAGTGCCGCTGCCCACCTGGATACACTGGAGCCTT
Seq A exon
GTAAGTGATCGCCACTGGGCAGCAGAGCCCGCCCACCCTCTCTGTTCCTGCTGCCGCCAGCCTCATATTCCTGTACTTCTGTCTCTCTGGCTGCCTAAGGAGTTACTGAGGGGACAGGACTCCAGGCAGTGATGGCCGTTAGGTGCTCCTGCTGTTTGTTGAGCATTAGAGCCCAGTCAGGGTCTTAGAACCAGCTTCCATGCCTTCCTTTGGCAGAGCAGAGATAGAGGGCCTGGATGTTGTGTTGAATATCAATATTTGGGGTTGCTGGGGCAGATTTGGGTTCCACTTTGACACTCCCTCAATTGCATTCATTTCACACTTTGATAATTCCCTCGATTGCATTCATTTTACACTTTTGGCTATTAACGGTCCATGTCGTTCTGCTCTGTGTGGCAGTTAATAAGATGGATAAAAGAGGATGAGTTCAGTGCCTTAGAGAAGGAAATAGATGTTAGAAATAGTTTATGCTCAAAGGTCAGCTGGGTTATTTAATGCTCATAGATATGTATGTGTTGTTTTGTGAATATAAAAGGACTTGTACCACATTCGTGTAGTATATGTGCACATGGTTTAATTCTTTCTGGAAAACATAGAAGCAAGTACTTAATCTCTACTGTGTTGTGCTTAGTTGCTCAGTTGTGTCCGACTCTTGGTGACACCATGAACTGTAGCCCACCAGGCTCCTCTGTCTATGGGGATTCTCCAGGCAAGAATACTAGAGTGGGTTATCATGACCTCCTCCAGGGAATCTTCCCAACCCAGGGATGGAACCCAAGCCTCCTGCATTGGAGGCAGATTCTTTACTGTCTGAGCCACCAGGGAATCTCAAGAATACTGGAGTGGGTAGCCTATACCTTCTCCTGGGGATCTTCCCGACCCAGAAATTGAACTGAGGTCTCCTGCATTGCAGGTGGATTCTTTACCAGCTGAGCGCCCAGGGAAGCCCTTGTCTCTACTACTTTCTTTATTTTGTGGGAAGGGCATTCTTTGGTTTGCTTGTATTAGCAAACAGACTAAGAGGCAGAATTTGTCCAAAAAAGTGAGATTAAAAAAAATCTTGTTCCCTTACTGAGAAAATTTTTACACCTGTAAATCACAGAACTAAAACTTGAAAAAATGTGGCTCATGAGGTAGCTGTTTCCTGCTGACAGAGTTAAGGCTGTAAAGTAAAGCTAAAGAAAAAACTGAATTAGCCAAGAAAGCCCTGATTTTCAGAAAAATGGATGAGCATCTCAGACTATTTAATTGTTAATGTTGCTTTTATGGGTTTTTATCAAGGTCCTAGTTGAATAAGGCTTTGAGAAATTTGGAGCAATTTTATAGGAGCGTAAAAAAGACAAAGGCTTAAAGTAGGAGGTATATTCATATAATATGGAGGAGGTTCATCATTTTGCAGAAGAGAATGCTAAAAATTGAGTACAAGGAATATGTACTAATTAGGTGATGTGAAGATGTTTCATTCTTCTTTGAGATTAGAACAAACACACCAAGTACACTCCCAGTGTAACCCATGGGCTTTTTGAGAGTTGCATGGATAGTCCCTGTAACTAAGAGTGTGTGGCCAGTGAGAGTCATCTCTCTGATAGGACGGATTCTCCTCAAATCGAAATGGTTTCAGTAGAAAATATCCCCCCAAAAGGGAAGGAGTAGGTGACCCCTTGACCCTTCCAGTCAATATGATTGGTGCTCTTGTTGTTAATGAAATGAACAATATTGAACAGAGGAGCTTGTCTATTTTAGGGTCCTGGGTGCTGCTGTGTTTGTGAACCTAAGGGTTGTAGGTTGGGATAAACTATGGTGTCCTTTGTCACATGTTAATCCCTCAG
Seq C2 exon
CTGTGAGGATCTTTGTCCCCCTGGCAAGCATGGACCACAGTGTGAGCAGAGATGCCCCTGCCAGAACGGAGGCGTATGTCATCACGTCACTGGAGAGTGCTCTTGTCCTCCTGGTTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=13.3)
A:
NA
C2:
PF126612=hEGF=PD(7.7=2.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACGGTGATCACTGG
R:
AGGAGGACAAGAGCACTCTCC
Band lengths:
358-2187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]