GgaINT1017735 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56223834-56224489:+
Coord C1 exon
chrZ:56223834-56224080
Coord A exon
chrZ:56224081-56224368
Coord C2 exon
chrZ:56224369-56224489
Length
288 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GCTGTGTACCACCTCTGCAGCTG
3' ss Score
7.21
Exon sequences
Seq C1 exon
CCTGCGACAGTGACCACTGGGGACCTCACTGCAGCAGCCGCTGTCAGTGCAAAAACGGAGCCCTGTGCAACCCCATCACTGGTGCCTGCCACTGTGCGTCTGGTTTCAAAGGGTGGCGCTGCGAGGAGCGCTGTGACCAAGGGACATATGGAAATGACTGCCATCAGAAATGTCAGTGTCAGAATGGAGCCACCTGTGACCACGTGACTGGAGAGTGCAGATGTCCTCCTGGATATACCGGAGCCTT
Seq A exon
GTAAGTAGAGGGCATGTTGTATACAGGAGGGATATGCAGAATATAAAGAGTGCTAACAGGGGAAATCAACTTTGGACTAACTACTGTTAGTTACAGAAGGTAACTCCTGTTACCTTCCAGGTGTGTTGCATGGATGCTATACAAAATTCAGTTTGCTTCTATTGTGAACTGCTTTCTGTTGCCTACTTTTGACCACAAAAAAATGATAGCATTAGCAATAGAGAGGTAGCTGGAGGACGAGCCTTGTGCCCAATTAACAGTTGTGTCTGCTGTGTACCACCTCTGCAG
Seq C2 exon
CTGTGAGGATCTCTGCCCCCCGGGGAAGCACGGGCCGCAGTGTGAGGAGAGATGCCCCTGCCAGAATGGAGGCATCTGCCACCACGTGACCGGGGAGTGTGCATGCCCACCAGGATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=13.3)
A:
NA
C2:
PF126612=hEGF=PD(7.7=2.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAACCCCATCACTGG
R:
CATCCATCCTGGTGGGCATG
Band lengths:
306-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]