BtaINT0091668 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12805773-12807326:-
Coord C1 exon
chr10:12807076-12807326
Coord A exon
chr10:12805894-12807075
Coord C2 exon
chr10:12805773-12805893
Length
1182 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
ACCTCTGCTTCTCTATGCAGCTG
3' ss Score
11.33
Exon sequences
Seq C1 exon
ACAGGCTGTGATAGCGACCACTGGGGCCCCCATTGCAGCAACCGGTGCCAGTGCCAGAATGGGGCCCTGTGCAACCCCATCACAGGCGCCTGCGTGTGTGCTGCTGGCTTCCGAGGCTGGCGCTGTGAGGAGCTCTGCGCGCCAGGCACCCATGGCAAGGGCTGCCAGCTGCTGTGCCAGTGCCGCCACGGCGCCAGCTGCGACCCCCAAACGGGCGAGTGCCTCTGCGCACCCGGCTACACCGGTGTCTA
Seq A exon
GTGAGTAAAGCCCAGGCGGGACACATGCAAAGGGGTGGCTGGGAGGGTAAGACGGGGAAACACGTGAAGGATCAAGAAAGCTCTGGCTGTAAAATCTGCACTCTGGCCCCAAGTCCTGCAGAGGCTGAACTCCCAGGCCTCACCCACACAGGTCTCAGATCCCTGCTGTCCAGGGCCCAGGGTGCCTGGAACTGGCTTGGAGGACTCGTGGATGGATGCTCTCATGGTGGGAACAGCTGGCTAAACCTTCTTCTAGGAGACCCTTCCTGATCTGGGCTCCAGATTTTGGCTTGGAATTCTCTTCTGATCATAATCCAAGTGCCATTACTGAACCTTCTAGGCCATTTGAGACAGAGTGGGTGAGGGCCCTGGGCAGATATCATGCTTAGATTTGGGGAGATTACTGTGCCTGGTCCTCTTCCCCTGCCTTTTCCCCTCATCCAGTTTTCAGGAGAGGGAGTCTGCATGGACAGGATAGTTGTGACCCCTCAGAGGCAAGATTGACGTTCTCCTCACCACCCTATCAAAGGCTCAGTGGCCACCTCAACAGCCTTAGATCCTGTGGGAGCACCCAAGCAATCTGGCCACAGATACATCTCTGATGGAGGGTGCCTCCTGCCCGCATGTCTGACCAGCTCCAGGGCCAAGGCATTGAGCTAAGGCCCAAGACCAAGACCACAGGCAGACCCTCCCCTGCATCTCGGCAGTGCCCAGTCCTTCTAGAGAAGCTTATGGGGGTGCTGAGAGCCTTCCAGAGCCTGGAAGGGAGTGGAAGCCTGCCCACATTCTCTCTTTCAGAATCTAGGCAGATTCTCATGGCTACATCTCATGGCCTTTGCTTGTGCTGTTCCTTCTGCCTGGCTTGGCCTTCCTCCCCTTCTCCCAGTGAAACTAACTTTACCTTTAAGACTCAAGTAAAATGCCTCCCTCTTAAGGAAGATTTCCTCTGCTTTCCCACCCCAGAAGAGCCCTCTTCTTTATACCGAAAGCCCTTAAGTCATCCCCCATACTGACCCAAGCACACAGCCTCCAAGGACACTGTCTGAGTCCCTCTTTCCCCTCCTGGCCTTGTGCCTTGTATAGTTCATCCTGACCGGGAACTCACTAACTTCTAGAGAGCCCAGGAGTCTTGGGACTGGCTTTGCATGCTGCTGCCTCTCACACCTCTGCTTCTCTATGCAG
Seq C2 exon
CTGCGAGGAGCTTTGCCCGCCTGGGAGCCATGGGGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAACGGGGGTACCTGCCACCACATCACTGGCGAGTGTGCCTGCCCTCCAGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=54.8),PF0005319=Laminin_EGF=PU(54.3=29.8)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(43.5=48.8),PF126612=hEGF=PU(61.5=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGATAGCGACCACTGG
R:
CTCGCCAGTGATGTGGTGG
Band lengths:
344-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development