MmuINT0097649 @ mm10
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64638235-64640134:+
Coord C1 exon
chr9:64638235-64638481
Coord A exon
chr9:64638482-64640013
Coord C2 exon
chr9:64640014-64640134
Length
1532 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
ACCTCTTCCTCTCGCTGCAGCTG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GCTGTGACAGCGAGCACTGGGGTCCCCACTGCAGCAACCGGTGTCAGTGTCAGAACGGCGCCCTGTGCAACCCTATCACCGGCGCCTGCGTGTGCGCCCCGGGCTTCCGAGGCTGGCGCTGTGAGGAACTCTGCGCTCCTGGTACTCACGGCAAGGGCTGCCAGCTGCTCTGTCAGTGCCACCATGGCGCCAGCTGTGACCCGCGCACTGGCGAGTGCCTCTGCGCTCCTGGCTACACAGGCGTTTA
Seq A exon
GTGAGTAGCGAGGGCGTGGCTTGGGGTGGGGCCAGGGCGAGATCAGGACTCCAGGGGTGGGGAAAGAGGGGTGGGGCAGAGCCAGGAGACTCTGCTGGATGCCCAGCTGGGGACAGGGTGGGGGGGGGTGGGGGGGTGTAGGGAGGTGGGTAGCGTGGCCTGAATGACCCTGGTTTGGAACAGGTCAGGGCTGTGGCCTGGAGGCTCTCACCAGGGCTTTCAAGGCTTTTGGGCCACTTCTTAGCACCCTAGTAGGCAGGAAGAGCAGAAAGTCCCGGTTGTGACATCTGCCCTCTGACCCCAAGTGCCCCAGTGTCTTTAAGTACCCAGGCCTCACCCCTACAAGTCTCAGATTCAAGCCCTTAAATACCTGGTCCTACTGGAGACAACTCACATGGCCAGAGGGCCCTTCCTAGTTAAGGGACACAAGTGAGTTTGACCTCCTCTTCTAACTTTCATACTATGCCTGTTTGCCCCATCCTAATTGGGCCTGGTTAGAGCCCATCTGATGTATCATGTGCAGATTGGCCCCTCACTTCTGTGTCCTGGGGAAGCCATACTGATAGGGATTCCCCAGGGCAGCTTATTGGACACTCTCACAGACAAGACTGGTGCTGTCTTTCCAGCCCAGCTGAGGCTCTCTAGTGTTCTCTTAGATCCATAGCAGAAGCCAAGGATGCTGGCCATAAGACATCCTGGATTGACAGGCTCTCCTGCCCCAGTATCTGATCAGCTCCCATGAGGCCATGGTCATTGGAATGAGACCCAAGGCAATGATACAGACCTTCCCTACACTCCCACAGTGGCTGGTCCCCACACATGGCAGCTGGGAGCCTCTCAGAGCCCAGGAAAGACATTCCTTGGAGTTTCCAGCTTTTACCTTTGAAAACAGGCAGGTTTTCAGGGGCTGGAGAAATGGCTCAGTGGTTAAGAGCACTGGCTACTACTCTTCCAGAGCTTCTGAGTTTAATTCCCAGCAACCACATAGCAGCTCACAACCATCCTATAATAGGATCTGATGTCCTCTTCTGACATGCAGGCATACATGCAGAGAGAGCACTCATACACATAAAGTACATTTTTAAAAAAATCTTTAAAAGAGAGGAGAAGAAATAGGCTAGTTTTAAAAGGCAAAATCCAGGGCCACATCTTAGCACTGTTGCTTGTGATTTTTTTACCCATCTGGCGTGCCCTTTCACCCTCTCCGTGCAATCGTGCAATCCTGCAATCGGCTTCACCTTCAAAGCCTAAGTAAACCATCTTCTTAGGGAAGTCTCTCAGCCTCCTCCCCAGAACCTCTGAGTGCTGGCCCAAGTGCCCTACAGTTCAATATATTATATCTGTCTCCCCCTACTGGCAGGGATCAGAACATCCATGCTTACAGATGGTGGGGAGGGGTTTCAGGCTCTCAAGTCTGCAGGTGGGCTGGTTGCTGATGTCACCCACACCTGGGGGGAGGAGTCAGGTGCCTGGGACTGAGCACTAGGTTGCTTTTGGGAATTCTGCTGTCTGACCTCTTCCTCTCGCTGCAG
Seq C2 exon
CTGTGAGGAGCTGTGCCCCCCTGGGAGCCATGGAGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAATGGAGGCACCTGCCACCACATCACTGGCGAATGTGCCTGCCCTCCAGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466:ENSMUST00000093829:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=54.2),PF0005319=Laminin_EGF=PU(54.3=30.1)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(43.5=48.8),PF126612=hEGF=PU(61.5=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACAGCGAGCACTGG
R:
CACATTCGCCAGTGATGTGGT
Band lengths:
347-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types