GgaINT0027376 @ galGal4
Intron Retention
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17752703-17754294:-
Coord C1 exon
chr10:17754048-17754294
Coord A exon
chr10:17752824-17754047
Coord C2 exon
chr10:17752703-17752823
Length
1224 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TTTCTTCTCTCTCCACAAAGCTG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTTGCGATAGCGATCACTGGGGACCGCACTGCAGCAACCGGTGCCAGTGCCAGAACGAAGCCCTCTGCAACCCCATCACGGGCGCCTGTGTCTGCGCAGACGGGTACCAAGGCTGGCGCTGCGAGGAGCTCTGTGAGCCCGGGAGCTACGGCAAGGGCTGCCAGTTCCAGTGCCAGTGTCACAACGGGGCGACCTGCGACCACGAGACGGGAGAATGTCACTGCGCTCCTGGATACACGGGGGTGTT
Seq A exon
GTAAGTTCAGTGATGGGTGTACTTCACCCTGCATTGTTTTAACAGCTTTGCTTTGGCTGCTATTAATGCGATGAGTAATTATCAGAATTTGCACTATCTGTATATTATGCACTTTCCTTTGCAGAAATCAGGTAACAGAATTTCAGAGAGGCTGAATAAAGGAAATCTCTGTTATTTGCTGCTAATGATACCTGTCTGCATACCAAAATAGATCTTACTGCTAAAATGAACTCAAAACTCCATGACATTTCCCAACAACTGTGGCTACAACAGCTGTAGCTGTTCCTAATTTCAGTGTGTGAGTACAATCCAAATTGCAGTTCAGTTTTTTTAAGCGGTTGGGCATCCTGCTCGTTAGCAATCCAGTGCAGCATCAAATGGGACTTACCATCCCCAGTTTATTTGGCTTTCTATCTAGCAGAGGAAGCATTACTGGTAACTATATGAGCTTACTATCTAGGGGGTAAATTTTCAGCGTAGTGAGGAGGGATTTAGCGGTGTGATTCCTATTAACTTTAACGAGAATCGTGTAGCTAAATCCCCAAATACCACACAAAGTTTACCAGTAGGATTCACAAAATCTGCATATTAATTTTAGGACAGCAAGAAATAGTTCCTTGTTTAAAATTGCCCACGGTGTAACATCAGTACTCATTAGAGATCTTTCAGTAGTTTCAGAAGTAATTATGCTTTTCAGAATTATTTAAAGGGAAAAGATAATTTACTCACTGAATTTGGCTGGAGATCTATTACAGGTGACTTAATATTTCTGCAGTCTAATAATAGTTGTTGGCCCGCGTGAAGAAGGTAAAAAATAAAGGCAATATTAACCCTCATAAATAAGTGATATACTTTTTGAATATTTTATTTAGTACCTGATTTCCTCATAGCCTTCTGACCTCAGTCCTGAAAGCACTCACTGCTAAATGTTCCGCATGCTATTAGGACTGGTCCCATTGACATTAGCATGTCTGTGCTCAGCAGGAAGTACTTGTATGAACATCCTCATCAGAGAACAGCCACATACTGGGAAAACGTAGAGTACTGTCGGGGATATGAGAGTTGTCTTATTGAAATAGGTGGAATTTGGTGTATGCATAACGATTGCACACATGCATCAGCCTTACAGCATCAGACCTGCGTTGTGGATTTTCCTCTTTTACCGTTTCCTGCAAGTTCTTTTAAATGACCCCGTTGGTTTTTGTTTCTTCTCTCTCCACAAAG
Seq C2 exon
CTGTGAAGAGCGCTGTCCCTCCGGGAGCCACGGAGCTCAGTGTGAGCTGCGCTGCCCGTGCCAGAATGGAGGGGTCTGCCACCACATCACTGGGGAGTGCTCCTGCCCTGCTGGATGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631:ENSGALT00000012349:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=53.0),PF126612=hEGF=PU(84.6=13.3)
A:
NA
C2:
PF126612=hEGF=PD(7.7=2.4),PF0005319=Laminin_EGF=PU(52.3=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGCGATCACTGGGGACCG
R:
ATCCAGCAGGGCAGGAGC
Band lengths:
358-1582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]