BtaINT0091677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12729037-12731678:-
Coord C1 exon
chr10:12731574-12731678
Coord A exon
chr10:12729094-12731573
Coord C2 exon
chr10:12729037-12729093
Length
2480 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CTTTTTCTATTTTTATGCAGGTG
3' ss Score
10.77
Exon sequences
Seq C1 exon
TAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAAGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCTACACTCGCCAG
Seq A exon
GTTAGACTCCCAGCCCTATACCCTCTATCCCCTGGACCCCTGAGGCCATCCTATAAGACCAGACCCACACCTACCCCAAATCCCCTTCCTATCCTTTCACCCACCCCATGGACCCAGAACTCTCCCTGTTGAGCCCCTTCCCTCCGACAAGCCTAGTTCCCCATGGGAAGAAGGAAACCCGTCTGCATTCCTCAGTCATTCCTGCTATCATGCTCAGTGGATACGTACAAACTGCAACTGGTTTTACGTGGAGGGAACAAAGCGTAACCACACTCCTTGCAGACCACGGAATACAACCCAAAACCACTGAGAAATGACTTGGGGATGGCTACATCTTTGGGCCCATGGGTGTGGATGACAGACAGTAGACTGGCCAAAAAGCCCAAAGTCCCCCAGAGGGAGAGCCCAGACCAAGCACTCCTAGGTCAAAGGGCAGGTGGTCCAGTAGGGATCTAGATCTAGAGAGGTTGAGGCCGGACGTGTCAACCAACATCCTCTGGGCCCATATATTTAGGCTCAAACCTGATAGCTTGGGAAAGATGCAAAAAGGAGACTGAAAGTCAGTCCCTACTGTGGGAGGAGGTGGGGTAGGAGTTACAGAAGTAGGTCCAATGAACAAATAGAGAATGTGGGCCCCCAACAAAGTGCCCCTGCCCCTGAGGGCACCCTGAACACCCGTGGGGCCTAAATTCAGGCTCTAGCTGGTTTCTAGAGCTCAACTGAAATGCAGCTCTAGCAACCCCTGCAGGTCTCTGGGTCCAGGGACAGTAAAAAGAGCAAAGGTCTGAACTCATCAGTTCAGACTGAACTCAGTTACTGAACTCATCAGTAAGTAGTTATGGGCTTCAGAAACCCTGGGCTTATACCCAGGAGGCTGTGCTCCCGGCTGTCAGCTCCTGGAGCAGTGCTCAGGACATTCAATAATCCCACAGAATACAATCCCCACCCCCAGCCCCTGCAACATACACACACACAATCACCACCCTGCACCCCTTTCCACTTGGAAGCATCCTCTGGGCTCAGCCCATCTCTCTCTCTCAATCACTACAGCCAAAGCCACCACACGTCATTTTCTGGCTTATACTGAGGTAGGCTGGTAAACAACGGGAGGGTGTACTTCAGGACATCTGGGTTCTACGTGGAGCTCAACTTCTCACTTGGTGTGGTCTCAGCCAAGTCACTGCCTTTCTTTGAGTCTGTATTCTGTTCTATAAAAAGGGGGTTAACTTTTTAATAGCCTAGCCTCCATCCCTCAGGGAGGGCAAAGGAAGCCCTGGTCCCAGGATAAAGATGCCAGGGGTTCAGATTGTCGCAGTCCTATTTCTGAAGGGCACAGGTACCTATAGGTCCTTTAGAAGAATAGCGAACTTGAGAAAACTTGGACCTGCTCTGCTCTCAGTACCGTGTGGAAGGCAGGGAGATAGGAGTAGGCTTCTGCAAATTCCACCAGGGAACTCTATATGGAGGCGGCATGAGGAGGTATCGGAACAGCCATGTGTTGGTCTTTGGTGTCAGACACTGGAGAGAGTTGAGTGGAGTCTAACTGTATTTTAGTAAGCACTTGCTCCCTTGTCTAATACTGCAGCCTCAGTTAAAAGCTGGGGGGGAAAAATGGCTTTGACTGTGAGCTCAAGTCATTACTGTCCAAATTCAAAGTATCATATAGTTTCTTTTCTGGGATCACCAGCAGCGAAGAACCTGAGCTTGGTCCCTGAAGTTTCACGTCCTTCCTACCTCTGGCTGGTGCTGAGGACCATGCATTGTGGGAGCCTAGGATAAACTGTAGTAGCCAAAAGGGAAAAAAGAAATGCTTGGGATTGAAAAACACTGGAAATGTTGTTCAAAGACAACTCTCAATTATGTGCAAATAGTCCACCCAAAAAAGTGGGGACAGGCGACTAAAAGAGCTGACTGGCTGGGAGTGACTGTATAACCTGTAGAGAGGACTAACCAACCTCAGCTGCCTGTCCACCTCCCTCTGGCTCCCCTCAATCGAGCATCAGACCCACAAGGGGAGCGACAGGCAAGACTAGAGCTATGAGGTGAGAAAGTCTTCACCCTCATTCCAAAATCCAACAGAAATGGGATTTGGAATGTCATACACCCTTCCCCCAAGCTGAGAACTGGTCCTGACTCATTCCCTATCCTACACTCTTGGAACCTGGAACTTCACTTGGTGACTGTAGGTGGCATCAGAACTGCCTGTGATCGCCTCCAGAAGACATTCCCCTCAAAGAGATTACAGAGCAGTAGTGCTAAATATGCAGGGGGTGACAGAGCTCACCACTTACACATAGGAGCTTTTTAAAGAACTCTCGTATGGTCAAGATGATTTAGAGGAGATTAAACCCCGAGTAATTTTCTAGCACTAAAGAACTATTTTCTGGGTAGGAGAGAACAGGAAAAAAAAAGAATACATGTAGTCTAAGTAAACCTCATTCACCTCTCTATTTTTCTTTCCTTTTTCTATTTTTATGCAG
Seq C2 exon
GTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development