RnoINT0091345 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70175965-70178302:+
Coord C1 exon
chr8:70175965-70176066
Coord A exon
chr8:70176067-70178245
Coord C2 exon
chr8:70178246-70178302
Length
2179 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTCCTTCTGTTTTTATGCAGGCA
3' ss Score
10.17
Exon sequences
Seq C1 exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAG
Seq A exon
GTCAGACCCCCAGCCCTTCCTTCCACCCCCAGAGCTCTACACCCCATCCCTGTCCTTATGGAGCCTTCCCATGACCAGTCTACAGCCCTATGCCCTACCCAAAGGTGGAAGTGTATCCCAATCTTTCCCATTACCCTTTTCACCCCACCATGCTAGCTGAGGTAGACAAATTGGGGTTGCTTGTGGAGGGGACACAGCCTATCTATATTCCCTTTATTCTGCAATATGCAACCCACACATGGTGTAGTTAACAGAAGGTTGGCTCTCTGGACAAAAAAGCTCAATGATTTCCAGAAGGGCCCCAGACCTAACAGTGGCCCAAACTTACCACCTTAGAAAATGAGGTAGGAGTGCCAAGCAGAGACCAGGAGAGGACAGGCAACATCTACCACTCAATACCTCTGGACTCAAATACCGAGCTTGAACCTAGTACTGAGAGAGCTGTCAAAAGACATGTGACAACTAAGTCCCAAAAGGGAAAACATGCATCAGTAACAGGAATGAGTGTCAAAGAAATATAATGAATGGACAGAGAATGTGGCCTTTCTACTAGTAGCTCCTCTAGAGCAGGTACTCTGGGAAGGGCCTCAGTATGCTAGACAGCTCTGGGTTTGAGTTTAGGCTCTAGGTACTCTTGCTCCAGTGAAACTGAGTCAACTTCACAGGTCTCTGGTCCAGAAAGTATGAAGGTTCAGAATTTATCTTGTTGAGTAGGCATGGCTGCAAGGACCCTGATGACTGTGTTCCTCAACTATGGCTAAGCATTCAATACCCCTTGGACTTGTATGATCCCTACCTTTACTCCACCTTGGGTCTAAACAGGAGCATGAGGCATCATCTGGGCTCAGACCCAGTTCTCGTTGTCCCATAGACCTTCAACCACTGTAGCCAGAGCATCACACTGTTATTTGTTGGCTCACAGCCAGCTAGCTGTGGCCACTAGGAGAGAAAACCTCTGTTTCTTGTTCTATAAAGGAAGGGGTGGCGGCGGCTAACATTATAGGTACCTTCCTTTCTTCAATGACTACTAATACATGATAAATCCAGGCCAGCATGGCTTGCTGTATGTTTTTGAACAGTATAGCTTCCTACAGGCCTTTTAGAATGGCTCAGTTTTGTTTTATCTCTCAGGAAGGCATGTAGCCAAGATAGATATAAACTCCTGCAATTTCAACATGGGAACGCTATGTGGAGGGAGGACCCAAGTATCAGTGGGTTTGTCTTCGGTGTAAAAAATGTGGGCAAGTTAGATGGAGTCAATATATTTTGGGACTGTCTTCAGTTAAAGACCAGGCTATATCTAGTTAAGAATCCATACTGCTTCTTGGTTCCCAGTAACCATATTAGACAGTTCATAATCACCTGAAACTCCAGAGCTTGTACTCATGTGTAAATAGACAACACACACACACCTTTGGAAAAACACAACGGAGTGAAGGGGTTAAGTTAAACATTACTGTCCCAACATGGAAAGGCCGGACGTGCTCCCATCCCTGGGAGCACTTGTCGCAATCAACCCAAGCTCATGTCCTGCTCCTGGCTAGGGCTGAGGACCGTGCATTCTGGGAACCCAGGAAACAGCTAACTAACAGCAAAATGAAGAAATAATTCCTTAGGGCTGAAAAACACTTGTAGAACAAAGCCCTCCTTCTCCACCCACTTCAAAATGAGTAACTGAGCAAACCAGCTGTGGCCAGGAATGACAATCTTCCTGGAAAGATACTCATCAAGTGCCCCACCTACTTGTTACTTCTCACCAGCACCCCAGATCCAGGAAAGGCAGGATCAGAGCTCACAGGTGAGAAACCTTATCTCCAAAGCAAGAGAAAGAATCAGAATTGTCTGCATCTTTCCCTCCAGCTAAGCACTGGTCTGGTTTCATTTCTTACCCTGTGTCTCCAGAGCCTGGCACTTCACCTGCAAAGATCACAGATGGCATCCCGCGAGGGGCAGGTTAAGAGGAAAGCCAAAGAAAAGAAGGTGCTGGAGCTCATTAATGTGATGATCCTTTTAAGATTCCCTCTGTGTTCAGAATTATTTAGAATAGATTGAATCTAGAATAGTTGCTAGGAGCAAACAACTATTTGCTTGGTAAAGAAGAGAACTGCACAGGGAGGAGGAAGACACCAGTTGTCTAGGGAACCTCACCCTGTATTTCTTTCCTTCTGTTTTTATGCAG
Seq C2 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=NA C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]