BtaINT0094769 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47722834-47723377:+
Coord C1 exon
chr19:47722834-47723007
Coord A exon
chr19:47723008-47723212
Coord C2 exon
chr19:47723213-47723377
Length
205 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCTGGCTGTCATGGTGGCAGGTA
3' ss Score
6.18
Exon sequences
Seq C1 exon
AGGTCTACACCATCCAGGGCAACTCCCACGGGAAGCCGTGCACCATCCCCTTCAAATATGACAACCAGTGGTTCCATGGCTGCACCAGCACTGGCCGCGAGGATGGGCACCTGTGGTGCGCCACCACCCAGGACTACGGCAAGGACGAGCGCTGGGGCTTCTGCCCCATCAAGG
Seq A exon
GTGAGGGCCAGTGGGTGGGGTGGCAGGAGGTCGGCCCTGGGGTGGGGAGTGCAGCAGGTGTGGGCGGTGGAACTTTCCAGACTCGAGCGAGAAGTGCCCCCACCCCCCACCTCCATAGGGTCTCTGCATATTCCTTGAGGGACCTCCCCTTGGACCCCGCAGAGCGGGCTGGGGCGGGACCCACACCTGGCTGTCATGGTGGCAG
Seq C2 exon
GTAACGACTGCGAGACCTTCTGGGACAAGGACCAGCTGACCGACAGCTGCTATCAGTTCAACTTCCAGTCCACGCTGTCCTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGGGCAGACCTGCTGAGCATCACGGAGATCCACGAGCAGACCTACATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739:ENSBTAT00000020897:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.9=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCACCATCCCCTTCAAAT
R:
TAGGTCTGCTCGTGGATCTCC
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]