GgaINT0144049 @ galGal4
Intron Retention
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2414091-2414578:+
Coord C1 exon
chr27:2414091-2414264
Coord A exon
chr27:2414265-2414413
Coord C2 exon
chr27:2414414-2414578
Length
149 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CCAACTACTTGTCCCCATAGGCA
3' ss Score
9.43
Exon sequences
Seq C1 exon
AGATCTACACCATCCAGGGCAACTCACACGGGAAGCCCTGCACCATCCCCTTCAAGTATGACAACCAATGGTTCCACGAGTGCACGAGCACAGGGCGGGAGGACGGCCATCTCTGGTGTGCCACCACGCAGGACTACGGCAAGGATGAGCGATGGGGCTTCTGTCCCATAAAGA
Seq A exon
GTAAGTGTGGGTGGCTTATCCAGTCCCAATGAGATGAAGGAGCATCCTGATGGCTGCTCAGCACCCAGCTTTGGTGGGATATTGGTTTAGCTTGGTTTTTCTTGAAGCTGGGGTGGGATGTGCTGGGTGCCAACTACTTGTCCCCATAG
Seq C2 exon
GCAATGACTGTGAGACCTTTTGGGACAAGGACCATCTCACCAACAGCTGTTACCAGTTCAACTTCCAGTCCACGCTGTCCTGGCGGGAGGCTTGGAACAGCTGCGAGCAGCAAGGAGCCAACCTGCTTAGCATCACCGAGATCCACGAGCAGACCTACATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461:ENSGALT00000000627:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.9=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCATCCAGGGCAACTCA
R:
GCGTGGACTGGAAGTTGAACT
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]