MmuINT0100626 @ mm9
Intron Retention
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105189286-105189755:+
Coord C1 exon
chr11:105189286-105189459
Coord A exon
chr11:105189460-105189590
Coord C2 exon
chr11:105189591-105189755
Length
131 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
TCCGTCTGTGGTGGTGGCAGGTA
3' ss Score
6.24
Exon sequences
Seq C1 exon
AGGTCTACACCATCCAGGGAAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGATGAGCGCTGGGGCTTCTGCCCCATCAAGA
Seq A exon
GTGAGAAGCCCTGGAGGGAGGCTGGTGATGAGGAGCTGGGATGGGGGTGGGGGAGACTTCAGAGAGGGCTGAAGAACGGATGGTGTAGCTTGTGGGATTGTGGCGGGACAGTCCGTCTGTGGTGGTGGCAG
Seq C2 exon
GTAACGACTGTGAGACCTTCTGGGACAAAGACCAGCTGACTGACAGCTGTTACCAGTTTAACTTCCAATCCACACTGTCCTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATCACGGAGATCCACGAGCAGACCTACATCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-Mrc2:NM_008626:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.9=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTGGCAGAGAAGATGG
R:
TAGGTCTGCTCGTGGATCTCC
Band lengths:
246-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: