DreINT0016780 @ danRer10
Intron Retention
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11051354-11053698:+
Coord C1 exon
chr11:11051354-11051527
Coord A exon
chr11:11051528-11053533
Coord C2 exon
chr11:11053534-11053698
Length
2006 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTCTTTGTTTTTTTTTTCAGTGT
3' ss Score
11.58
Exon sequences
Seq C1 exon
ACATTCACACACTTCAAGGAAACTCTCATGGCATGACCTGCTCCATACCCTTCAACTATAACAATAAATGGTTCTGGGACTGTACCTCAGAGGGCAGAGAGGACCGTCACCTCTGGTGTGCCACCACCAACCGCTATGATCAAGATGAGAAATGGGGTTTCTGTCCAAACCCAG
Seq A exon
GTAAAAAAAATATATTAAAAAAAAAAAAAAAAAAAAATATTTTTTCACACTGGTGAGTGGTTTTGACAAACCACCTGTAAGAGACACAATTTGTCATCTCCTGCATTTAGAGGAAAAATAACATAGCATTTATAATTTTTCTGCTCTTTGATGATTTAAAGTTGTTGTTTTTCTCACTTGTAAGTCACATTGGATGAACGCATCTGCTAAATGAATAAATGTAAATGAATATGTAAAGCCACTTAACTAAAAGTTAACTTTTCAAAATGTTTTCATTTAAAGACTTGCAGTATGTGCATTTTTTTAAGAAATTAAAGTGAGAGTAAAGTTTAAATTTTTTTACAATGTGTAGTATATAAACAGAGCTGTTGAATGATTGATTTCGATTAGCATTACAGGATCAATTCAACAATCTATGATATTATATTTCACTACTCTAAATGATGTCAGTTCCTTTATAGCATGCAAAAGTCAAAAATCAAATCAAAACTACATTAAAAGCTTTGAATGAGAAACTAGTACTACACACAGGAGCTGTTACAGGACAAAAACCTAGCAAATGTCATAAAACACAACATCTAAACTGAGTTTTAGATGTGACAATTGTAGTATAAGAGGAATTAATTAATAATAAAAACTCCTTACATTTATATAGTGCTTTTCTGGTCACTTAAAAGGCGTTACACATTTTTGGGTGGAATCTCCTCATTCACCACCAGTGTGCAGCATCCACCTGGATGGATTGGTGTAGAGGAGACAGAGTCTGTTTCTTAATATGCGTTCTTTAGCAATCTTGTGTCCCTGTGTTCTTGTGTAACATCATCAACTGCCAAAGTTCAGTTTCAAAACTCAAACTGCAAGAGCGGAGGATGCGTAAAAGCACCCGGATGTATTCTTAATATCAAGGATGCACGCCACAGATGCAGACCTGAGCACCAAACTCTAGAAGTCCCGGAAGACTTTGCGACTGGAGGTGGGAGGCACAGCATTTTATATAGATTTATTATTAAAGTTCAGAGAGATAACTTGTTTATCTCAAGAGTTTCCCTGAGTGAAAGTAAACATCACTACGAAAATCTTAATAAAGGTATGAACACATTCATTTTATTTGTTGAAATTCATAATAAAATCTGTTGTATTTGTATTGTGTAACATATATTTGTAAAGATTTATACATAGTATATATTGTGAAAAGGGGAAAAACAATATATCATTGGATGAATGCTGTAATGTTTGCATAATTTTCAGTTAAAAATACGTTAAGGTCATGTGACCATCAGGAAGAATGCAGCATCTCATTTCTCAGAGAACGCATTCTCTGTTCTTGTGGTCTCCCGAGTTCGTTCGTTGGTCTGAGGTAACTTGGTAAAGTCTTCACAAGAACCCAAGTCCAATCTCTGCTTTCTTGGAATTGAGAAACAGTCCAGAGCGATAAAGCCAATTATGATATGGGGATGGTTAGGAGGCCAGTGGGCAAATTTGGCCAGGATTAATCCCTTATCCTTTTTCGAAGGACATCCTGGGATTTTTAATGACCTCAGTAACTTCCCATCACTCATGTCATCCGGAAGACGGCTCTCACTGAGACCCCATCATTATACTGAGGCATTAGGACTCACATAGACTGCAAGTTTAGCACCCCTAACTAACACCATTTTCGGCAACAATCATGTGGTCGCCCGTCCAGGTACTGACTGGGCGCAGGCCTGCTTAGCTTCAATGGGCGACCATGTGAGAGCTGCAGAGAGCTAGCTGCTGGCTCTAGTCCAATTGACTCCAGTCTATTGAATTATTATAAGATAAATGGTGTGCAATATTTTCTGATAATTCAATGGCCTGTCATCAATTATTCCTTACACATTTCTTACATGAATATCTCACATAATGCACAATTTTCACATTTCTTATTTACATGGCTAGTACCTGAAATAAAAGTTGATTTCAGTTAATGATTTTCCCATCACAAAAGAAGTCTTAAGGTTAACTCTCTTTGTTTTTTTTTTCAG
Seq C2 exon
TGTCAGGCTGCAATGAATTCTGGGAGAGCCATCCAGAGCTGAATGCCTGTTACCAGTTTAACTTATACTCCATCCTAACCTGGAGCCAAGCTCTTACCTCCTGTCAAGCGCAAGGTGGAAGTCTTCTGTCCATCACACAGTCCAGTGAACAGAACTATATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474:ENSDART00000169992:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.6=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]