RnoINT0094087 @ rn6
Intron Retention
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93558288-93558793:+
Coord C1 exon
chr10:93558288-93558461
Coord A exon
chr10:93558462-93558628
Coord C2 exon
chr10:93558629-93558793
Length
167 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
TCCGTCTGTGGTGGTGGCAGGTA
3' ss Score
6.24
Exon sequences
Seq C1 exon
AGGTCTACACCATCCAGGGAAACTCCCACGGGAAGCCGTGTACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGGGAAGATGGGCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGA
Seq A exon
GTGAGAAGCAGACGGGCTGGGAGAGCCCTGGAGGGAGGCCGGAGATGAGGAGCTGGGGTGGGGGATGGAGGGAACTCAGAGCGGGCAGAAGAACTTTCGCGAACCGATAGTGTCGCTTGTGGGAGTTGTGGGGGGATCTATCTATGGTCCGTCTGTGGTGGTGGCAG
Seq C2 exon
GTAACGACTGTGAGACATTCTGGGACAAAGACCAGCTGACTGACAGCTGTTACCAGTTTAACTTCCAATCCACACTGTCCTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACCTGTTGAGCATCACGGAGATCCACGAGCAGACCTACATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548:ENSRNOT00000055137:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.9=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGACAACCAGTGGTTCCAC
R:
CTCCGTGATGCTCAACAGGTC
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]