HsaINT0104969 @ hg19
Intron Retention
Gene
ENSG00000011028 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:16875]
Coordinates
chr17:60743455-60743980:+
Coord C1 exon
chr17:60743455-60743628
Coord A exon
chr17:60743629-60743815
Coord C2 exon
chr17:60743816-60743980
Length
187 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
GAGGGCTGTCGTGGTGGCAGGTA
3' ss Score
3.6
Exon sequences
Seq C1 exon
AGGTCTACACCATCCAGGGAAACTCCCACGGAAAGCCGTGCACCATCCCCTTCAAATATGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGCGAGGATGGTCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGA
Seq A exon
GTGAGAGCTGTTGGAGCCGTGGGGGCGGGGGCAGTGTTCCTGGAGGGAGGCTGGTGCTGAGGGGCCCCGGGGCCCAGGGTGAGATACTGCCCCCTCCCCTACCTAGTGTAGCCTTTTGGTGGGGGAGGGTCTGCACTCCCGAGGGACCCTGGAGGGGGCCTGAAGGAGAGGGCTGTCGTGGTGGCAG
Seq C2 exon
GTAACGACTGCGAGACCTTCTGGGACAAGGACCAGCTGACTGACAGCTGCTACCAGTTTAACTTCCAGTCCACGCTGTCGTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCGGATCTGCTGAGCATCACGGAGATCCACGAGCAGACCTACATCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028-MRC2:NM_006039:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.9=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAACCAGTGGTTCCACG
R:
CTCCGTGATGCTCAGCAGATC
Band lengths:
257-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)