BtaINT0095736 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25109622-25112990:+
Coord C1 exon
chr11:25109622-25109724
Coord A exon
chr11:25109725-25112890
Coord C2 exon
chr11:25112891-25112990
Length
3166 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACCTTTCCTCTTTTATCCAGTGC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GAGAATCAGATGAGAGAGAACAGTCAAAATTGGAAGTGAAAGTTTGGGACCCAAATAGCCCACTTACAGACCGACAGATTGACCAATTTTTAGTTGTAGCCCG
Seq A exon
GTGAGTATGGCACTGTTTAGTCAAGATACACACACACACACGCACACACACACACACGTGTGTAATATAAAAGAATTCATAGAAAATTTATGAGTTTTCCTTTCATTTGTGTTCTACTTTTTTCCATTGGTTGTATTCTTCTGTGTAAGAAAGCCTAACATGTATCACATTACTTCCTAAATACTATGATTTATTTATTTATTTTAGTAATATTGATTTATTGGCATTAGTTTTTGTTTTAAAAATGAAAATAGATTAATTTTTATTGATTAAGAAAATTAATGCTCCTTGTAAAAATTTAAGCACTACAAAAAATTATAAAGAAATTCAACAGCTGAAATCCCGTATCTTTAATTAAAGCAGTGATCTCCTTTAAGCCCATGAGGGACTATCCAGGTGTAAGTAATCATGTGCGCCTCTGATCGCAGCCACACGTGAGTAAGGTCGGTTGCTGGGTGTAAGGCTTTCCTGTGAGTTCTGAGTCCGGCTCCCCAACTGTCTTGTGTGCCCCCTGCCCCTTTTCTTGAGAAAATGAATGGGATAGAAGTCTAGTTTTTTTGTTTTGTTTTTTAGAAGTTTAGCTTTATTTTTTCAATTATAAAAGTAAATAATGTTCTTGAAGGAATTGCTGCAAAACAAGTAAAAGATATTATCATAGCATTGTCATAGCAAAAAAATTGGAAAAAACCTAAAAGCACATCAGCAAGCAGTTGATGAGTGAATTGAGGTTTATTTAGTAATAGAGTATTGACAACAATTAAAATGAATTTAATTAAAAGAATGAAATGGGGCTATATGTAGCAGAGATAAACCTCAAAAATAGTATTGAATAAAGAAAAAGTATGATCAACTGATAAAAAAAAAGTTTACAGTGGGGACTTCCCTGGTGGTCCAGTGGTTAATTAAGACTTTGCCTTCCAATGAAGGGGGTATGGGTTCAAACCCTAGTTGGCGAGTTAAGATCCCATATGCCTGTCACCAAAAAATCAGAAGCAGTACTGTAACAAATTCAATAAAGACTTTAAAGAAAAAATTTATAATATGCAAACAATGTCTTATTATTTCATTAATGGGCTTATGTATGCACATGCATATTATGTATGCATGTATGAGTTCTGGGAATGTATATGGGGGCTCTAATGAAATTATAATATTTATTTCCTTAAAGAATGAACCAGATGTGGCAAAATATTACCTGTTTTAGCTTAGTTTTTGATTTATTTATTTTATTGAAATATGTTTGATTTACAATAGTATATTAGTTTCAGGTGTACAACATAGTGGTTCAGTATTTTTGTAGATTATATTCCATCTAAAGTTATTACAGAGAAATGGCTGTATTTCCCTGTGCTGTACAGTATATACTTATTGCTTCAAACATGGCAAAATAATAGAATGAGGTAGATCTGGACATGATTATAATCATCTCCATTATATTCTCTAGTTTTTTGTTGAATGTTTGTCATAATGCAAAGGACAGAAGCCCTTGGCCATCCTTTGTACTGTTCACAGTGTTGGTCACCATGGAAGTTATGCACTTATTGGTGGCTAGGCATTCAGACTCCAGAGCCTGGAAGCCTAGCCACTAACTGATTAGATGGAGAGACTTGGTTAGTGTACATTGCTGGGGAGGAGCCAATCAGTGAAACAGATGAGACTGAAGATTTGGGACTGAATTATTGGTGGAATCGCTGGCCTGGAGTCTCCAGACAGGTTACCTGGATTTTGGTTTATTTAGTAGGCTTTGCAGTTTCAAATTTATTGTTCTTTCCTTTTCCTGATTGCCAAGGGCCATGTTTTCTTTTTTCTTGAAGCCAGCATGAGAGGCACCAAGGAGATACTCCCAGTATCTTTTTCAAGTTTTTTTTTTTTTTTTTTTAATCTAAGTACAAATTAAGACCCAGTTAAGTACCACTGCACATTCCAGTGCCAAGCATTGGTGAAGAGGTGGGGCGACCAGTACCCACATATCCTATTGGTTGTGGTGCAAGTTGGTACAGCTGCTCTGGAAAACTATTTGCTGTCATCTAACACACACATCCCTAAAGTTTCAGTCCTAAATATATACCCAGCAGAAATGCATACATCTGTGTGCCAAAAGATATGTATACAGATGGCAGCAGTGGTACTATCCGTAGTAGCCCCAGACTGGAAACAAATGTTCATCAACAGTAGGGTTGGGGTGGGACACCATGCCAAGTAGTGCTCCATAGCAAGGAAGACGAATGAACACAGCTACAGCAGGCAACACAGGTGAACCCCCAAACATGGTTTTGAACAAAAGAAGCTGGTTATGAAGAGTGCACAGTGCGTGATTCTGTTTAAGTTCTCTGTTGAGCAAAACTCATCTTGGGCGTTAGAATATGGGATGCTTGCTCCCCTTGGGGAAGCGCAGTGACTGGGAAGGAGCACAAAGAGTCACCTGAGTGCTGTCAGGATCTGGGTCTCAACCTGCGTGCTGGTGACATGGATGCATTGACTTTGTGGTAACGAAAGAGTGGTACAGTGTGTACTTTTTGCACGTGTTTTATATTTTAATTAAAACCTTAAAAAAAATCTTCCTCATGTTAAAGCGTAGACAACAAGCAGGAAATCTTCTCTTCATGTTTCATTTCTTGAAGTTAGAGTTCTCTATATTTGGGAACGCCTTGTAAATCATTAAATTTAAATCAGTATTGTGATAATTGTTTTTCTTTCCTTAAATGGAAATCTGTTACATATTCCTTAAAGGAACATATAACTGCAGTTGTAATAGGTTGCTACAGTTGATGATATCTCATTTCAAGGGAAAAACATTACTCCACTTTCACCATTTGGGATAAAAAGGTGGTCACAACTTGCTTTACAGTAGTAGTCAAACTCTGCATCTAATGTATATCTCATTTTTGAAACACAGTTGTGTACCAGATTGTTAACTACATGAAATTTCACTATAGATCTTTCCCTTGTTAATGCCACACAAACTTCTTAATTATAATGACCTATATGTATAGTGAATTGGCTTGTCATTTCTTAAATTGTAAAGAAGATACTTTTTAATCTGATATTTGATTCTTAAACATCAAAGAACTTGTTTGGCTATTACAATTGTTCATTTACTACCCAGATTTTTTTTTCTTTCAAGATAAAAGAACAACAGTGCCTTAACCTTTCCTCTTTTATCCAG
Seq C2 exon
TGCTGTTGGGACATTTGCTCGAGCCCTTGATTGTAGCAGTTCTGTAAGGCAACCTAGTTTGCATATGAGTGCAGCTGCAGCTTCTCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073:ENSBTAT00000033090:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development