MmuINT0101460 @ mm10
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83762914-83766606:+
Coord C1 exon
chr17:83762914-83763013
Coord A exon
chr17:83763014-83766506
Coord C2 exon
chr17:83766507-83766606
Length
3493 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCTCTGTTTTTGCTCCCTAGTGC
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCG
Seq A exon
GTGAGTATGCCACTATAGCGTCAAGTCTTTATGTGAAAGGAAAAAACAAAAGACTTGTTATTTTTATTTTATGTGTATGAGTATTTACCTGCATGTACATAAATGTACTATATATGTGTGCCAGTTGCTTTTGGAGACCAGAAGAGGGTATCGGTTATCCTGGAATTAGAGTTAGAGACATTTGTGAGCTACCATGTGGGTGCAGAGAACCAAGTCCAGGTCCTCTGTGAGAGCAGCATTCTTTCCCACACAGCCTGTGTGTCTCACTGCTAATGCCTCACATAGGAGAAAAGCATCCTGGATACTGAAGGATGTGCATGCAAATGGCTTTGGTAGCAGCCTTCACAGCATCTCCACCGTGGAGATAGATGTCCAGCTGGAGATGCAATGTTGTCCAGTTGAAGAGGTGAGGAGGCAAAAGAGAATGCCATTTCAGAGGAAATGCATTAACATCACTCCAATAACAGACGACTCCAAGCAGAATTAAACAAGGGGAGGAGTGTGCAGCCAGGTGTGGGGTCTGTAATAGACCTGCAGTCCAGTACCTGGGAGGCAAACGCCAAGGAGTCCTCCTGCCTCTGACTCCTGGATTGAAGACCTGAGTTTGATGTTATCTGAGCTGCCATACCAAATTCCAAGTCAGCCTGGGCTATAAGTGACCTGATCTCAAAACAGCAGTATGTCTAATATATGTGTAGCTTCATGTCGGGAACGCTATCAGTGGTCTGTGGTGTCGGGAATGATGGTGTACATCTATAGTTCCAGCACTTGGGAAGCCAGGGCAAAGCCATGGGCTAGCCTCGGCTTCGTAGTGAGACCCTATTGTGGACTGATATTGATATCTATAGTTATTGTTAGCTTTTGATTGTTTGAAACAGGGTCTCACTGTGTAACCCTGACTGGCCTGGAACTCACAGAGATCCTCCTGCCTCTGACTCCTGGATTGAAGACCTGAGTCACCACAATCAGGCCTGTTGGTCTGTTTGCTTCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTAGAATTTGAGATGGTGGGTCTTTTTGGGAAGAGTGTGGGAAGGGTTAACCCCTTCTGATTCTTCACGTGGGTATTGGTTAGACCCTGGCCACCTTCACTTTGTGAGAACCAAGTATCTGTATAGTATGGTAGGGTTTGCTTTTTATTACATAATATATTTTAAGTAAACCGATAGGAAGAAGTAGCTTCCCCAGCTATCATGTTTAGCAAAGCAGACAGCCTATGTATCCTGCACCCCTCGGGGTGAAGGCTCCTTGCACACAAAAAGGCTCTAGATTATTACAAATGGAAATCGGTGCTGTGGAAGTTGCTTTTTAAAAAATGGCATAGTAGGGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTGCTGGTATGTCTGAAGTCAGCTACAGTGTACTTACATTTAATAAATAAATAAATCTTTAGAAAAAAAAAATGGCATAGTAGAAAATGTATTATTTTGAAGGCCACAGGAAGGGTTTCTGTTCTAACATCCATGTGGGAAACGTTACTGGGATTCACAGTGGATCTTTAGGACTTGCCTCACACTGGTAGTCAAACTCCTCCGTTAGCTTCCTCTTCCTGTTTTTGAGCACATCTGAATACCAAATGCTGTGTTCTGTTCTGAAAACCAAATGATCTGCCCCACGGCATTTTAGACTCCTCTTCCCTCCCTTTTCTATGACCACACAGGTTTGGGTTGGCTTGGTTTGGTTTTGTTTTTTCCTTGCTTGAATGATAATTACCTACATAGGCGCCAGTGCTTGGCAGCAGAGCTTCTCAGCTTCCAGGTTTTGTGGTTTGTTGCGGATTTGGTGTCTGCCTGATGAGCTGCCTTGGGGATGGATCCCGAGACTAAACATGAAAGTTTTTTATGTTTCATATGTAGTTTACAGAGCCCGAAAGGAATTTCATACAATATCTTTTTGCCCTTGCTTTGTTTTCAGATACGGTCTCACTATTGTAGCCTTGGCTGGCCTGGAACTCACTATGTAGACCAGGCTGGCTCCTAACTCTTAAAGATCCTCCTGCCTCAGCCTCCTGAACGCTGGGATTAAAGGGATTTGCCACCACACCATCCTTCATGCCGATGAGTTTGTACAGGAAACGAAGCTCAGAACAGAGTTCTTTATGGTGTCATGCCAGTACTGCTCAGGATTACTTAGTCTGTGTTAGACTTTAACCGAGAAAAAGACTTTTCAATTGATACTTAATTCCAAAACACCCAGCAACTTGTTTTCCCTTTCTTTTACAGTTAATGACTTACTACCCCAGGGTGTAGTCCTCCTCCACAGTCTCTGTTTTTAGTTCCTGCTCCCAGTTAAAGCACAAAGGCAGGGGCAGGGGACGGGGCTCCGTCAGTAAAGCTCTGGCTGCTAAAGCAGGATGTTCAGTCCTTAGGACCTGTGTGTGCTGGGTGTGCGCTTGGAAAGCCCAGTTGGGAGACCCTGGAGCTCCCTGGCTTGCTGTCCTAGATGGAAGCCCTGGGGTTCTAGTATGAACAACTCTCTCACAAATAAGGGAGACAGCTCCTACCACTAACGCTGGAGCTAACCTCTGCTTTCTCTGTGTGCACACATACACATATGGCTTTGCATTCCCCAAAATACACACACACACACACACACACACACACACACACACATACACAGAGGTGCGTGCACACATACATACAGGCACACACACATGCACGCACAGATACCCTACTCACACACAAATTATAAAATGAAAACTAGGGCTGGAGAGATGGCCCAGCAGTTAAGAGCATTGACTGCTCTCCCAAAAGTCTCTAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAGTGACATCTGATGCCCTTTTCTGGTGTGTCTGAAGACAGCTACAGTATACTTAGATAGAATAATAAATAAATCTTTAAAAATTAATAAAAAATAACAGACGGTGAACGGGTTAGTTTTTTGGCAACTTGACATAAACTGGGGTCATCTAAGAAGCAGGAACCTCAATTGAGAAAACCCCCTTCTCAGATTGGCCTGTAGCTAAGTCTAAGGCGTCTTTTCTTGATTAGTGGTTAACAGGGGAAGGTCTGGTCCACTAGGAGTGGTGCTCCACTAGGCAGGCAGTCCTGGGTCACTGAGGAAGCCGTGTGCACACCGGTGAGCAGCATCCTTCATGGTCTCTGCTTCAGCTTCTGCTTCCAGTTTCCTGCCTCACCCTCCCTCAGTGATGGGCCGGGACTTGGAACTTCCCTCGCTAAGTTGCTTTTGTTCATAGTGTCTATTCCAGCCTTATAAAGCAAGCTGGGACAGAGGGCTGGAGAGGTGATAATCTTTTATTAAAGGAGTAGATGGCTTACTGTTCTCTGTTTTTGCTCCCTAG
Seq C2 exon
TGCCGTGGGAACATTTGCCCGAGCCCTGGACTGCAGCAGCTCCGTGAGGCAACCCAGCCTTCACATGAGTGCAGCCGCAGCCTCCCGAGACATCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817:ENSMUST00000067826:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.008 A=NA C2=0.201
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.1=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.6=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types