HsaINT0105869 @ hg38
Intron Retention
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42656200-42659862:+
Coord C1 exon
chr2:42656200-42656302
Coord A exon
chr2:42656303-42659762
Coord C2 exon
chr2:42659763-42659862
Length
3460 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTGTTTGTGGTTTATTCAGTGC
3' ss Score
7.01
Exon sequences
Seq C1 exon
GAGAATCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAAGTTTGGGATCCAAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCACG
Seq A exon
GTGAGTATGAGTATGGCATTATTGAGTCAATAAATTTCTTTATATAAAAGAATTTATAGGTATATGTATTTTTATTTCTTTGTATTCTGCTTTTCTCCCACTGATTGTATTATTTTTTTAGTTAGGTAAGAAAGCTTAATACGTTATGCTGCTTCCTAATTTTATTAATTTCTGTTTTAAATGAAAATAGTTGTATTAATTTTTACTGATTAAGAAAACAGAAAAGTATAAAGAAGAAATTCTTTATACCTGAAGAAAATACCTGAAGTCCCACATCCTTAATAAAAAGAGTCATCCTTTTTACTTGACATAGCTTTACTCTAGACATGGATTATTCAGGTATCAATAAGAATGTGCACCTGGAATTCGCTCACCGCATCCATGTGTGGGTAAGGCCTGTTGCTAAGCATAGCACTTTGCCTTGAGAGCTTTCAACCTGGCTACCTGGCTGGCTTCCTTCCTTCCTCCCCTTTTCTTAAGAGAATGAATGGGACAGAATTTTATTTTTATTTAAAAAATGATAACAGTAAAAGTACATCAGCAAGCAATTGATGAATGAACTGAGGTATACTCATATAGTGAAATATTATTTTATGGCAATTGAATGAATTAAAGCTATATGTAGCAAAGAGATAAACATCACAAATAGTGTTGAGGGTATATACCATGTGATCATTTATGTGTATACAGAGTAATTATAAAATGTTTGCTGTGTACAAAACTATTTTATTAGTGGATTTTTAAATACATTAAATGGGTATATATAGTATATATGATCTAGGAGTATATATAGGGAACTCTAACAAATTTATAATATTTATTTTTTAAAAGAATGAACCAAACATGGCAAAATATTACTATGAGTTAGATCTGGACAGTGGATGCAAGGGTCTTCATTATGTTATTGTCTGATTTTGTGTTGAACTTATTTCACAATGCAGAGGAAAAAATAGTCTTGGCTCATCCTTAGATATCACTGTTCATAGAGCCAGTCACCATGGACGATCCCACTTTTTATTGGTGGCCAGGCATTTGGAGTCCAGAGCCCATCACCTAACTACTAAGTGACTGGATGGAGACACTTGATGAGCATTGTAAAGGGGCCAATCTTGTGGCCCCTTGTTGAGTACAGAATATTGGTCTAGAGTCTCCAGACAGGCTGTCTAGATTGGGGATTGGTTAGGAGACATTGCCATTTTCAAATTAGATTTGTATTCTGTATTTTCATTTTTCTGATTGCCAAGGGCTGTATGTTTCCCCTCAAAGCCAGCATGAAGGACACCAAGGAGTTGGTTCCTAGTATGTTTTTGTTTTCAATATTTGTTTTAAAAAATAATCTTGTAGGCTGGGAATGGTGGCTTATGCATGTAACCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTGTTTGAGTCCAGGAGTTCAAGACAAACCTGGGCAATATAGTAAGACCTCATCTCTTAAAAAAAAAAAAAAAAAAAAGGGCCCGGCACAGTGGCTCACGCCGCCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCAGGCAGATCACCTTAGGTCAGGAGGTCAAGACTAGCCTGGCCAACATGGTGAAACCCCGTCTCTACAAAAATACAAAAAAAATTAGCTGGGCATGATGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGACTGAGGCGGGAAAATTGCTTGAACTTGCGAGACGGAGGTTGCAGTAAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCGACAGAGGAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCTTCTAAATGCAAATTAAGACCACAGTCAAATACCACTGCCAATCCACCAGAATGGTTAAAATTTTAAAGACTGACAGTGCTAAGCATTGATCAAGATTTAGAACCAATACTCTCATATCCTGCTGGTGAGTGTGTAAATTGGTACAGCTCCTTTGGAATACTGTTTGCTGTCATCTAACACAAGTATCTCTTAAGTTTCACTCCTAAATATCTATGCAGCAGAAATGCATATACCTTTGCACCAAAAGATACGTATACAAATGGATTTATGGCACTATTCATAGTAACCCCAAACTGGAAACACATGGAATGTCTGTCAGCAGTAGAGTGGAGGTGGGGATGAGACGTCGTACAACGGAATGTCGCGTAACAGGGAAAATGAGTGAATACAGCTGTAGCTAACAACATGGATGAACCCACAAACGTAATTTTAATCAAAAGAAGCTGGACGTAATATCCAGCTGTGTGATTCTATTTGAGCAAAACTAATCTGTGGTGCTATAATCCAGGGTGGTGGTTCCCTGTGGAAAGGAGCTTGAGGAGCCTCTGGGTTGTGGTCATGTTCTTTCTTGAACTGTATGTTGGTGGCATGCATGTGTTCACTTTACAGTAACTATCTGTTTACTGTGTACTTTTCAACATGTTTGTTGTATTTTAATTAAAATATTTATAAAATTTCTTCCTTAGGGGTCAACCACAATGGCTCATGCCTATAATCCCAAAACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCCCAGGAGTTTCAGACCAGCCTGGGCAACATAGGGAGGCCTTGTCTACAGAAAATTTTTTTTAATTAGCCAAAAAAAAAAAAAAAAAATAGCTGGGCGTGGTGGTGCATGCCTATAGTTACAGCTACTTGGGAAGCTGAGGTGGGAAGATTGTTTGAGCCCAGGAAGTTGAGGCTGCAGTGAGCTATGATCATACTATTGCGCTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAATAAAAATAATAAAAATAAAAAATCTCTTCCATAGCAAACATGTTTAAAATACAGGCAGGAAAAGCAGTGAGTCTTCATTTTATGCTGTATGTGTTAAGGTTAGGGTTTCTTACATATTGGAAGGACTTCCAAATCATTAAAATCAGCATTATGGTAATTTCTTTTTAAATGAGATTTTAGTAGAAATCTGTTTCATGTTGAATCCTCACAGGAAGGGGTTGCTACAGTTAATGATATATTGGGGGAAAAATGTAACTGAGTTTTACAATTTGGGCTTAAAAAGTAGTCAAAACTTGCTTTGCTGTAATAGTCAAACTCTGCAGCTGACTTTTTATTTTTTGAGCCAATTTGAATAAATGTTTTACTCCATGACATGTTATAACAGAGCTTCCCTTTCCTTCTTTTTTACCCCCTGCACAGGCTATTTTTTTTCTTGATTTCATGATAACGACCTGTTTATAGTAAATTGGCTTGTCAATTATTATATCTTATAGAGTGAAAATTCTTTTTATTTGATGTTTGATTCTCATTCAGAAACTTGTTTTTGCCTCTTCTTTTACAGTTTTTTATTTACTATCCAAATGTGTTTTTTAAAACGTTAAAAAAACAAACCAAAACAGATACTTAATTCTTCCTTATTGTGTTTGTGGTTTATTCAG
Seq C2 exon
TGCTGTTGGGACATTCGCCAGAGCCCTGGATTGCAGCAGTTCTGTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935:ENST00000406652:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.036 A=NA C2=0.489
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development