DreINT0098380 @ danRer10
Intron Retention
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25160325-25163403:+
Coord C1 exon
chr12:25160325-25160427
Coord A exon
chr12:25160428-25163303
Coord C2 exon
chr12:25163304-25163403
Length
2876 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
CATGATGAAACTGTGTGCAGAGC
3' ss Score
3.69
Exon sequences
Seq C1 exon
GAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCG
Seq A exon
GTATGTCTTTGGAGCTTTCTATATATTTTATTTTTCTGTAGATTTAATACACCAAATATACATTGCTCTGCATTATAACTGTTTTTATGCCTTGAGAATGTCTCTTTAAAGGGATATTCCACAAAAATTTGAAATTTCCTCTCAATTAACTCTAAACTGTTGAGAAAGGCAAGATATTCTGAATGATTTTGGAAAAAAGCAGCCATTGAGATCCATAGTTGGAACAAAAAATGCTATGGAAATCAATGTGTTTTTCTCCCAATGTTCCTCAGTATATCATCTTTGTGTTCAACAGAAGAAGTGGAAGATGAGTAAATGATGACAGAATTTTCACGTTGGGTTGATCCATTTCTTTAATCAGACATTGAAGTGTATTTTTGTATTTTGTCAGCATAAACTATATGTTGATGATTTGTTGCTGCTTATCTCTAAACCCATTTACTTGCCTCATACTTGTTTGGTTTCTATAGGTCTACTATACAAAGGTAATTGATATGGCTTTAGGAAAAATATATTTTCCCACTCTGTGGAGCAAAATGGGCGAGATAACTGAAGTGTACTCAAATTGAATTGATTTGAAAGCTTGTATCCGCCTTTCCAATATCTCTGACAAATGACAAGCGACAGACTGGAAGGCATTCATTTCATATGGAAAGGAGTAGAGGAGATGCATGAAGCTCTAATCATATGTAAATTTGAGATTGAATTTGAGCTTTAGATGCATTGAAATATTTGGACTTCTTTGGCTAGATGGCTTGGATGTCATATTGGGATTTAACCCAAATTTGAACCCAAGGTTAGAATCACCTATATTTATTGACATCAAAAACAGTTGCGTTCCCCTACATTCTGATCCCTACCTTTATTTGAATTATAGTAATATTGAAGTGGTACGGTTCAAAATGGTGGAGTGGTGATGGGTTGTTTTTAAACAATTGATCGACTCGAGAATGATGAGTCCCTTTATGTAGTTATTCATTCATTTGCGGATGTGCACATTTGTGCAGGTGGGGTAGTAGATAAGTTCCTTTTTCGAATCTTCTATAGGGTTTGAGTCCTTTCTTCATCATGTGATAGACAGAAGCCAATCATATGCAGTCAGAGCTGGAAAAAGATTTAATCTGAGATTGAGTCCTCAGTTTTGAGTCACATCTTCACTTGCTTTCAATTGATGAATGAACGCCTCAAAAACACCAAAGACTCAAAAGATGAAGTAATCATGGGTCCTTTTAGCACAAACTGTGCTTTGGTAAAGCTTATATGGGACTGTCTATGTCACGTGAACGAACGACTCAAATTTAAAGACATGTCAGAAGAGGTAAGCCGAGCTAAAAGACAAAAGACCAAGATAAACAATTAATAGTTATTTTCCTTTCTCATAGCATTCTATTATGACTTTGTGGTGTGGTCAACGTGTTATGAAGCAACACGTAACATTCATTCATTCATTTTATTTTTGGCTTAGTTCCTTTATTAATCAGGGGTTGCCACAGCGGGATAAATCGTCAACTTCTCCAGCACGGATTATGCAGTGGATGCCCTTTCAGCTGCAACCCAGTACTGGGAAACTCCCATTAACACTCATTCACACCCACTACAGACAATTTAGCTTTCCAAATTCACCTATAGCGCATGTCTTTGTACTTGGAAACCCACGGGAATACAGGGAGAACATGCAAACTCCATACAGAAATGCCAACTGACCCAGCCAAGGTTCAAACCAGCGACCTTTTTGCTGTGAGGCAATAGCTCTACCCACTGCACCATTTTGGCAAATTGATAGATATCACTCGAAAAAGATTTGTTTATCTCGATAAACTGGAATCAAAGGTCAGAGTTTGTAAAATGACCCAAACTTCCCATTACTACTCATTGCTTAACGCTATTGGTATACACTCATCACCAGTGTGTGCAACAGACCAGGGGAATAACAAAACTGGAGGTACAGTTGTTAAATACAGAGCCAAGACATGACACTATAATCAGGGTTCAATGCTAAAGATTTTTTCTACTGGTCCAATTGATCCAGTGGTTCAGATTTTTACATTCTTTGCACAAAATTGGACTCCACAAAATAAAAATAAAAAAAAATAAAAAAAGATAGTAGCTATTTTTTGGCCACATAATTTAAATAATGAGTCAAAAATAACATGTGAATCTAGAATTTAAATATTTTAAAATGTTAACGAATCTTTAAAAGTATTTTATTGCAAAACAAAAGGTGGCTGACTTGCTAAACTGATGACCGGATCAGGCCAGTAATGATCCTGTCCAGAGCATCTCATTCCGGCCTCGGCCATTGGGCAGTCCTTATTGTTGAGTCCTGTTTTATTAATACAGTGATGGTGCGCAGCAGTAAACCATGGTTGTCCTAAGCTCAAACAAACCTTGTTTTTTTTTTTTTTATAACAAACAGCCACATACCAAGTAGCAAGAACAGGATCTGCTGTATTGTTTACAACTAGCTGGACCATTAGCCCGATGAAGCCCAACGGCTGACTGTCGGCTTGGTGTGTCCCGGCCTTTAAGGTGTAAAGGGTGTTGTGCAAACATACTGTTAGTAGTGTTTGAATGATCTCAATGTCTATTCTTATTACCAAAGAAACTCAAATATACTCCAAATCAATTAATTCGAGAGTTTGTGAATTTGCATCCAGCCACGAAATATGCATCTCATCCCAGTCCAAAAAATACATTTGCAATAAACGGATGCATCATGTTTTCCATGCTTTTTGTGAGCCCATCAGATCAGACCGGTGACCCCTTTTCGGGCTTTGACCCATGAGTTGGGAATCTCTGGTGTAGAAGCCACTGGAAAGTGTGTCAGCGAGGAAACCGATGGCATAATTAAATTTGCATGATGAAACTGTGTGCAG
Seq C2 exon
AGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903:ENSDART00000127454:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.006 A=NA C2=0.347
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]