HsaINT0105869 @ hg19
Intron Retention
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:23784]
Coordinates
chr2:42883340-42887002:+
Coord C1 exon
chr2:42883340-42883442
Coord A exon
chr2:42883443-42886902
Coord C2 exon
chr2:42886903-42887002
Length
3460 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTGTTTGTGGTTTATTCAGTGC
3' ss Score
7.01
Exon sequences
Seq C1 exon
GAGAATCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAAGTTTGGGATCCAAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCACG
Seq A exon
GTGAGTATGAGTATGGCATTATTGAGTCAATAAATTTCTTTATATAAAAGAATTTATAGGTATATGTATTTTTATTTCTTTGTATTCTGCTTTTCTCCCACTGATTGTATTATTTTTTTAGTTAGGTAAGAAAGCTTAATACGTTATGCTGCTTCCTAATTTTATTAATTTCTGTTTTAAATGAAAATAGTTGTATTAATTTTTACTGATTAAGAAAACAGAAAAGTATAAAGAAGAAATTCTTTATACCTGAAGAAAATACCTGAAGTCCCACATCCTTAATAAAAAGAGTCATCCTTTTTACTTGACATAGCTTTACTCTAGACATGGATTATTCAGGTATCAATAAGAATGTGCACCTGGAATTCGCTCACCGCATCCATGTGTGGGTAAGGCCTGTTGCTAAGCATAGCACTTTGCCTTGAGAGCTTTCAACCTGGCTACCTGGCTGGCTTCCTTCCTTCCTCCCCTTTTCTTAAGAGAATGAATGGGACAGAATTTTATTTTTATTTAAAAAATGATAACAGTAAAAGTACATCAGCAAGCAATTGATGAATGAACTGAGGTATACTCATATAGTGAAATATTATTTTATGGCAATTGAATGAATTAAAGCTATATGTAGCAAAGAGATAAACATCACAAATAGTGTTGAGGGTATATACCATGTGATCATTTATGTGTATACAGAGTAATTATAAAATGTTTGCTGTGTACAAAACTATTTTATTAGTGGATTTTTAAATACATTAAATGGGTATATATAGTATATATGATCTAGGAGTATATATAGGGAACTCTAACAAATTTATAATATTTATTTTTTAAAAGAATGAACCAAACATGGCAAAATATTACTATGAGTTAGATCTGGACAGTGGATGCAAGGGTCTTCATTATGTTATTGTCTGATTTTGTGTTGAACTTATTTCACAATGCAGAGGAAAAAATAGTCTTGGCTCATCCTTAGATATCACTGTTCATAGAGCCAGTCACCATGGACGATCCCACTTTTTATTGGTGGCCAGGCATTTGGAGTCCAGAGCCCATCACCTAACTACTAAGTGACTGGATGGAGACACTTGATGAGCATTGTAAAGGGGCCAATCTTGTGGCCCCTTGTTGAGTACAGAATATTGGTCTAGAGTCTCCAGACAGGCTGTCTAGATTGGGGATTGGTTAGGAGACATTGCCATTTTCAAATTAGATTTGTATTCTGTATTTTCATTTTTCTGATTGCCAAGGGCTGTATGTTTCCCCTCAAAGCCAGCATGAAGGACACCAAGGAGTTGGTTCCTAGTATGTTTTTGTTTTCAATATTTGTTTTAAAAAATAATCTTGTAGGCTGGGAATGGTGGCTTATGCATGTAACCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTGTTTGAGTCCAGGAGTTCAAGACAAACCTGGGCAATATAGTAAGACCTCATCTCTTAAAAAAAAAAAAAAAAAAAAGGGCCCGGCACAGTGGCTCACGCCGCCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCAGGCAGATCACCTTAGGTCAGGAGGTCAAGACTAGCCTGGCCAACATGGTGAAACCCCGTCTCTACAAAAATACAAAAAAAATTAGCTGGGCATGATGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGACTGAGGCGGGAAAATTGCTTGAACTTGCGAGACGGAGGTTGCAGTAAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCGACAGAGGAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCTTCTAAATGCAAATTAAGACCACAGTCAAATACCACTGCCAATCCACCAGAATGGTTAAAATTTTAAAGACTGACAGTGCTAAGCATTGATCAAGATTTAGAACCAATACTCTCATATCCTGCTGGTGAGTGTGTAAATTGGTACAGCTCCTTTGGAATACTGTTTGCTGTCATCTAACACAAGTATCTCTTAAGTTTCACTCCTAAATATCTATGCAGCAGAAATGCATATACCTTTGCACCAAAAGATACGTATACAAATGGATTTATGGCACTATTCATAGTAACCCCAAACTGGAAACACATGGAATGTCTGTCAGCAGTAGAGTGGAGGTGGGGATGAGACGTCGTACAACGGAATGTCGCGTAACAGGGAAAATGAGTGAATACAGCTGTAGCTAACAACATGGATGAACCCACAAACGTAATTTTAATCAAAAGAAGCTGGACGTAATATCCAGCTGTGTGATTCTATTTGAGCAAAACTAATCTGTGGTGCTATAATCCAGGGTGGTGGTTCCCTGTGGAAAGGAGCTTGAGGAGCCTCTGGGTTGTGGTCATGTTCTTTCTTGAACTGTATGTTGGTGGCATGCATGTGTTCACTTTACAGTAACTATCTGTTTACTGTGTACTTTTCAACATGTTTGTTGTATTTTAATTAAAATATTTATAAAATTTCTTCCTTAGGGGTCAACCACAATGGCTCATGCCTATAATCCCAAAACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCCCAGGAGTTTCAGACCAGCCTGGGCAACATAGGGAGGCCTTGTCTACAGAAAATTTTTTTTAATTAGCCAAAAAAAAAAAAAAAAAATAGCTGGGCGTGGTGGTGCATGCCTATAGTTACAGCTACTTGGGAAGCTGAGGTGGGAAGATTGTTTGAGCCCAGGAAGTTGAGGCTGCAGTGAGCTATGATCATACTATTGCGCTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAATAAAAATAATAAAAATAAAAAATCTCTTCCATAGCAAACATGTTTAAAATACAGGCAGGAAAAGCAGTGAGTCTTCATTTTATGCTGTATGTGTTAAGGTTAGGGTTTCTTACATATTGGAAGGACTTCCAAATCATTAAAATCAGCATTATGGTAATTTCTTTTTAAATGAGATTTTAGTAGAAATCTGTTTCATGTTGAATCCTCACAGGAAGGGGTTGCTACAGTTAATGATATATTGGGGGAAAAATGTAACTGAGTTTTACAATTTGGGCTTAAAAAGTAGTCAAAACTTGCTTTGCTGTAATAGTCAAACTCTGCAGCTGACTTTTTATTTTTTGAGCCAATTTGAATAAATGTTTTACTCCATGACATGTTATAACAGAGCTTCCCTTTCCTTCTTTTTTACCCCCTGCACAGGCTATTTTTTTTCTTGATTTCATGATAACGACCTGTTTATAGTAAATTGGCTTGTCAATTATTATATCTTATAGAGTGAAAATTCTTTTTATTTGATGTTTGATTCTCATTCAGAAACTTGTTTTTGCCTCTTCTTTTACAGTTTTTTATTTACTATCCAAATGTGTTTTTTAAAACGTTAAAAAAACAAACCAAAACAGATACTTAATTCTTCCTTATTGTGTTTGTGGTTTATTCAG
Seq C2 exon
TGCTGTTGGGACATTCGCCAGAGCCCTGGATTGCAGCAGTTCTGTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935-MTA3:NM_020744:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.041 A=NA C2=0.525
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)