BtaINT0095836 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50490450-50492546:-
Coord C1 exon
chr3:50492442-50492546
Coord A exon
chr3:50491068-50492441
Coord C2 exon
chr3:50490450-50491067
Length
1374 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGAT
5' ss Score
0.38
3' ss Seq
TGGCCTTTTTTGTTCTGTAGATT
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGTATTTCCAGGCATTATGG
Seq A exon
GTAGATATTTTATGTTCTTATTCTTAACTAATTTTCCTCTAGAGTTTTTTTCTTTGTAAAATGATGATTAAATACATTTTAAAAAATTGAAAGTGATACCAGTTTGTCTTGCAGCTTTTGAGATGTAGTCTATATCTTAGGTTGTTAATATTCATCTGAATATTTTTACTTTTCAGAGCACAGATGTTAAAATTTTCAGATTTGTCAGGAATTTTGCTATGTACACAAAGAAGAGGTATCCTGGTGTTTATAGATGTGCTCTTTTCTGTGAGACCTTTTTATACTTTTAATATACAAGTGTGAATTTTTTTTTTAATACGTTAGAATCAAGCACACAAACCTTTTTATTAGAAAAAGGATTTTAAATTCAGGATTTTTTTTTTTTATCAATAACAGACTTTCCCTCTAGTATTTTTTTTTAACCTAACTCTTTAGAAAGGCAACTTTTTCCTGAAGTCTGATGTATCAGGTAAGAAAAATTTAGTTTATTTGGGGCCAGGGCCATGAGCTTGCAGATTTTATTCTTCCCTTTGTTTAATTTTTGTTTTCACAACCAGGGATTCTGTTAAGCTTATGCACATTATCTTTTTTTTGTACATTGTCTTATTTAGTTTTTAAAACAGTCTTTTGAGTTGTTTCCATTTTATAGATAAGAAAACTGAGACTTAGAGGGTTTTTGTAACAAGCCCAAGATGGCATGTTTATTAGCAAATATACAAAACTGGGGTTTTAACTTGGGCAGTATGATTTAGACTTCTCTGGCTATGTTATATTTTGACCTTGTTTTATAATACCATAAAATCTTTGAATCTCTGAACTCAAAGCTTGTCTTGTTTAGTCCCTTCACTTAATCTCTTAAGAGAACACAGAAGATAAGAGATTTAAATTTGACCAATATCATTTGAGCTATACCAAGGGTATAGTTTAGGCTTATTTCAATTTATTATATTACTTAACAATAGGCCTACAATTGATAACCAAGAGAACCTTTATACTGGTTCTTCCATCAGTTAAAGCATATGTAAAGGTGTCTTTTATGTAATAGGTACTTATTAAATATTTCTTGCACTGAGTGAATGAATGAATGAACTTTCTTCTTTTTAATGATAAAAATGTTGACAAGATCTGACTTAAAAATCCTCTTGGTAAGTAAGAATTTGCCTTGTTGGCTTCATAAATCAAAATTTCCTCTGATTCTTTTAAGCTTAATAGTACATAGTTAAGGAAGAAAAGCTCTTCAAATGTCAGCCCCAAGAAGGTGATTGAATTTAATGAAGGCGAGTGATAATCCATTTCATATAGCATTTGTTGTTTTGATTTGGCTGATTTTTGTGTCAGCAAGGGTAGACAATTGTGGCCTTTTTTGTTCTGTAG
Seq C2 exon
ATTATCTGACTCCAGAAAAAGAACTCGTACAGGAAGATCTTGGCCTGCTGCAATACCACATTTACGGAGGAGAAGGGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAGATGATGAAGGCAAAGAAGATTACCAATTTGATGAACTCAACACAGAGATTTTGAATAACTTAGCAGATCAGGAGTTACAACTCAATCATCTAAAAAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGTGAAAAATACCGAGTATTGGCTCGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTGCGTCCTGACTGTAGGACTGAACATTATGTTCACTGCACTCTCATTTTCTGTAGGTACAATTCAAAACCCTAAAGGAGTCTGGCTTTTACTATCTTTAAAAAAAAAGGTTAAAAAAATCACATAAGATGATACTAGCCTTAACATGTACTTGTCAATGTTATGGATATTGTCATAAAAAGATATCTTTTAAAAATCAGAGACTTAATTTTTTAAATCTTAAGATTTGTAGAATGTTTCTAGGATAGGATATTAAAAATGATTCAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCTTCCAGTGCAAAAGA
R:
TCACCCGACGAGCCAATACTC
Band lengths:
356-1730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]