HsaINT0105973 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93599648-93604638:+
Coord C1 exon
chr1:93599648-93599752
Coord A exon
chr1:93599753-93602226
Coord C2 exon
chr1:93602227-93604638
Length
2474 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGAT
5' ss Score
0.38
3' ss Seq
TGGCCTTCTCTGTTACATAGATT
3' ss Score
7.14
Exon sequences
Seq C1 exon
GAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTTCCAGGCATTATGG
Seq A exon
GTAGATATTTTACATTCTTATTTTTTTTACTTTTTTTACTCTAGATTTCTTTTCTTTGTAAAGTGTTGATTGAATAATTTTTTAGCAATTGAAAGTGATGTAAGTTGTGTCTATCAGCTTTTTGAGAGGTAATCCATATGTAGATCCCAATAGTTGTTAATATTCATTTGAAATATTTTTGCTTTCTAGAGTACAAATGTATTTTTCATGTTTGTGTGGAAATTTGCTGTGTACACAGAGAAAAAGTATACCATTGTTTAGAAGCTGTGCTCGTTAGGCTTTTTAATGCCTCTGCTACACAAGTGTTCTTTGCTTTAGGAAGATATGATTTTTTTTTTTCTTTTTAAGAGACAGATTCTCACTCTGTTGCCCAGGCTAGAGTGCGGTGGCACAATCATGGCTCATTGCAGCCTCAAACTCCTGGCTTCAAACAATCCTCCCATGTCGGCCTCTCTAGTGGCTGGGACTACAGATTGTGCCACCACACCTAAGTAATGCTTTTTTATTTTTTGTAGAGATGGTTTTGCTAATTTGCCCAGGCTGGTCTTGAACTCCCGATCTCAAGTGATCCTCCTGTGTTGGCCTTCTCAAGTGCTGGGATTACACGCCTGAGCCACTACAGCTGGCCAAGATTTGATTAAAAAAAAAAAAAAAAATCAGACACCTAAATCCTTTTGTCCATAAAATGATTTTAAACTTAAGATTTTCATCAATAGCAGACTCCCCTCTGATATCTTATTTAATCCAGCCCTTCAGAAGGACAACGTTTTTGTTTATTGTTTATTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCATGATATCGACTCACTGCAACCTCCGCCTCCTGGATTCAAGCAATTCTGGCACCTCAGCCTCTCATGTAGCTGGGATTTACAGGCGTGCGCCACCATGCCCAGCTAACTTTTTGTATTTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCAGGTCTTGAACTCCTAATCTCAAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGCCACTTTGCCTGGCCAGGACAACTTTTCTCTAAAGCACATCATGTCAGGTATGAAAAGGTTAATCTATTTGGGGTCAGAGCTACTATTTTCAAGTTTTATACTTCATTCTGTTTAAATTTTGTTCATAATTCGAAAACTGCTGTTATAAATTATGCAAAATTCTACATTAAATGCTTAAAGTGTAACCCATTTATTAATGAATTCTGAATAATCGACTTTTTTGGGGCCTCTTACTAGATACTCTGCTAAGCTTTTTACAAATATTGTCTTATTTAATTCTTAAAACAATTTTTTGGCTGGGTGTGGTGGCTTATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGTGGGAAGATTGCTTGAGGCAAGAGTTTGAGATGAGACCCCATCCCTACAAAAGAAAAAAATTATCTGGGCGTGGTATTGGTGTCTGTAGTCCTAGATAATCAGGAAGCTGAGGCGGAGGATTACTTGAGCCCAGGAGGTCAGGGCTCCTGTGAGCCATGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCTTGTCTCAAACAAACAAAAGAGAACAATTTTTTGAGTTGTGTAAGTCCTGTTGTTCTCATTTTACAGATGAGGAAAGTGAGACTTAGGGGATTTTAAGTAACAAGCCCAACATTGCATGTTTAGCAAGTATAACAGAGCTGGGTTGTTAACTTATACAGTATGACTGTAGGTCTTTCAATTTAGTTGTTGTACTATATTCTCCTTTTATTATAAAATCATAAAATAATTGAATTTCTGTGCTGAAAAGGACCTCACACATTATCCAGTCTAACCCCTTCACTCATTAAGTTCATGAACATAGAGATTGAGATTTGAATTTGGCCAAGTAATAGAGTTAGGGATAGACCCAGGATACTCTGACTGCTAGTTTGTGCTTATTCTGATTCTGGTGTATTACTTCACTAGGCCTAGAACTGGTAATAAGAGAACCTCTATTCTAGTTCCACTCTTTAAGGACATGGAGCAGTGTCATAGATGTAGTTTGTGCTCATTAATTATTTGTTCTAATGAACAAATGAATGAGCTCTTTTAAATGATGTGATTATTGGCAATACCTGATTTATGAGTAGGGCCTCTTCGTAAGAATTTTCCTTGTTGGCCTCCTAAGTAAAAAAATTACCCTAAACTTACTAGTAGTTAAGGAAGAAAAGCTCCACAAAGTTCAGCTCCAAGAACGTGACAAAATCTAAAGTAATGAGCCCAAGTGATAGTCCATTTATATAGCATTTATTGTTTGGGTTTGGCTCATTTTTATATCATCAAGGATATATGGTATAGTAGAGTAATCCAGAAAAGAGAACATATTGTATGGGCATAGGATGCTAAAAAAGCTCAGTAGACAATTCTGGCCTTCTCTGTTACATAG
Seq C2 exon
ATTATCTGACTCCAGAAAAAGAACGCGTACAGGAAGATCTTGGCCTGCTGCAATACCACATTTGCGGAGAAGAAGAGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAGATGATGAAGGCAAAGAAGATTATCAGTTTGATGAACTCAACACAGAGATTCTGAATAACTTAGCAGATCAGGAGTTACAACTCAATCATCTAAAGAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGCGAAAAATACCGAGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTGCATCCTGACTGTAGGACTGAACATTATGTTCACTGCACTCTGATTTTCTGTAGGTACAGTTCAAAGCCCTAAAGGAGTCTGGCTTTTACTATCTTTCTTAAAAAAAAAAAAAAGTCAAAAAAATTCAAAAAAGGGGATGATACTAGCCTTAACATGTACCTGTCAATGTTATGGATATTGTCATAAAAAGGTATCTTTTAAAAATCAGAACAGAGACTTAATTTTTTAAATCTTAAGATTTGTAGAATGTTTCTAGGATAGGATATTAAAAATGATTGAAACCCATGCATGGTGTTAGACAATTTTTCTAATTATTCCATTGAGTCAGTTTTTTGTGATTAGTGATTATCAGAGCAAACATCATGTAGATAGCACAAGTATTTGGAGAAACGTTGTTTGTTTTGTTACCAAAATGTTGGAAAAATTTATTTCAATACCTTTTAGATTTCATAAAGTGCAGTGTATATAATGCCTACTGAAAGACTGTAAAATATTGAAATTTTCTTTCAAGCAAAGTGTAAAAAAATATATTGAGCCTGTAAATTGCTCTGTGACTAGACTTCATTGTCGTCTTAATATATTCTTGCATGTGCATATATATACACACGTGTATATATATGTGTGTGATTATGTGACCTATGCAATACAAATTATGGGAATGGGCAGCTTTGGAGTATATATCCCATAATTCTTTTTTCAGGAATAGTTGCAGTATTTACACAGCAGCATTTCTTCTCAGGCTTTTATTGGGTGCTGTTGCTTGCTATGTATGAAGAGAAATGTGTCAGACAAGTTTAGTGTGTTCTGAAGAAGGGTGTGAACAACAGTGTTCATGGGCTTTTAGAATGCTTTTCACTTTTAGTCCTTGTAACTCAGCTGTTCAGTACCTAAAACAAATTCAAATAATATGAACATTATCTCCTACTAGAAGTAACGTTTTCAAGTTTTCATGGCACATTATGATTGTAAATGTCTCTCATTTTTAACAGTAAGTCTATAGGAGTCCCGTGAAGATTCCTGAAATGTCTGTAGTAACTGTTAGTCATGTTTGAATAAGTGTAGTATGAACAAAGTATTTTATTGCACAGGGTTAACAAACAGTATGTTGCCAGCTGAGGCTACTGCTGTTTTATTACAACATTACCTCTTGTTTTTATAAAGTGTACCAAGATTTAAATTGATAACTTTATTTTACTTGTAAAAAAAAAGTTTCTTTTATCACCAGTGTTACAGTTGTCTTCTGTTTCTTTTTGTTTTGTTTTATTTGTTTTCCTTTTTAGCCAAAGAGTGAACAGAAGATTTTCTTATTTTGGTGGCTATTCATTTTACTTTTAAAAGTGATTGGTGGATTTTAGACTAATTATGGGGGAATTTGCCACCAAAATAAAAAATATGTAAAGTGTAGTGATTACAGAGTGGTTAAAATGTGGGTTAGTACTTATTTATTCCATTAATTGATTATTTGACTGTTTATAAAGAAAGTTGCTTTATTTCTTTAAACATCTTCAAAAGATGATCCTTTCTTGTCACATTATAGCCAAAAGAAGCAGAGAACTTCATTGTCTGCATTTGGTTCCTGGTTGGCCAGGTATAAATGAGCTTTACAAAAGTGCAAATTAAAAACTGTTACTTCTGTTTACCTCCACCAAAACTTGATTTTCCCCTAGCTATTAATTTAAGGTTGCCTTTCCTGCAGCTGCAATATTTTGAATAACACACAGAGTTTGTGTTGATTTTTGAATGTTTGTTTATATCTAGGGGTAATGAAAAATGTAAATCCCGTGTATCCTTATTCACTCCACCTGTATCATATTATTTCATTTTCCCCAAAGTCCTTTAATTCTAACTGAACACCAGCAGTATTTTTAGAAATTTTTCTTTAACATACTTGGAAGATGATTTATCCAGCTGAACTGTCTTTAGACGTAATTATTGTGAATGTCTGTTTTATTTTCTCATGGTGGTTCACATGGCTCTGATGTTCAGTTTGTATTTTTGGAATTGCTTTACTTAGAAATTAAAACAGACCAACATTAAATGTGTGTATTTTTTAAAGAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_001164392:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)