RnoINT0095101 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2658267-2661521:-
Coord C1 exon
chr14:2661417-2661521
Coord A exon
chr14:2659159-2661416
Coord C2 exon
chr14:2658267-2659158
Length
2258 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
TGTTCTTTTCCCTACCCTAGGTT
3' ss Score
11.47
Exon sequences
Seq C1 exon
GAGAACTGAGGGAGTTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTCCCAGGCATTATGG
Seq A exon
GTAGGTATTCTATATTACTGAGGTTTCCCCCTGTAACTTCAGCAGTGTTGGACTAGGCTGGCCTCAAACTAAGAGATCCACTTGCCTTCCTTGAGTGCTGTGATTAAAGGCATGTGCCACCAGTGCCCAGCTTGATTGATTGATTGATTGATTTTTTTTCAATTTCAATTTAATTTTTTTTTTAGCACTGAGTTTTGTAGGCGGGGCATATAGGAGTTTTTGTACGACTGGCCACAGATGACTTACACACAGCTGTGTCACTATGAAACATAGTTGACAGCTCATAAAAGCTGCATCCCTAGAAGTCTCTGCATAGCTTGCAGACAGCTCCAAAAACAGCTTCCCAGTGTTTTTTTTCTCTGTACTTATAACAGTAGGGAGGAGGCTTTAAAAGTAAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGATAGTCTTGTAGCTTTTTATGTCGTCTGAGTCTTTTTTTTTCCTTTCTTAGCTTACTAACTTTTTAAACGCTTACTTACTCTTTCACAGTAAAAATAACTCACTCACACTTCTTGTATTTATTTTTCTCCTGTTCCCTTCCTCCTTCCTTTTATCCCCACTTTTCTTTTTTCTTTTTTCTTTTTTTTTCTTTTTTCCTTTTTTTCAGAGCTGGGGACCGAACCCGGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCTCCAACCCCATATCCCCACTTTTCAACAAGTTCTTGTACCTTTAACTTACTTAATTAGGTCCACTGTACTCAATTGGGATTGCCTTCATGAGTGTGGCATTCTGTTCTTACTCTTTACTAAATTCCTTTCAGATTGTTTGTTTGTGTGGTTTTGATTGAATAACTTCACGATTGATAGTAATGTATGTGAGCCTTGAGGTTTTTGAGAAGCAAACCATATATATTGATTGTCTGTGTTGTTAAACATCTGAATGCTTTTAGAACACAAACATAACAATACAGATACCATTGGATCTGTGGTTAAAAGAGCTTACTATCTTTCTTTAAACAGAGAATCCCAGTCTGGTTCCACATCAGTCAGCTTACAACCTTCTACAATTATAATTTCAGAATATTTGGTGTCCTTTTCTGGCTTTCTTGGGTATCGGCACACATGTAGCATACTTACACACACATACAACACACACACGTAGAAATAAGTCTTAAAATATTTTTTCCCTTGAATGAGGTCTTAGTAATTGACACACCCCCCCCCCCCAAAAAAAAAAAAGAAGAAAAAAAAAAAGAAGCCATGCTGTCCTTTCATCCTTTGGCTCTGGGAACTGAGGCATGTGTTACTACTATGTTTTGGCTTCTTAAGTTCATATACAACTGTACCTTGCTTTTAGGACATTTTATATTTTAAATGTCTGACTCAAACGCCAAGCCTTTGACAATGCAATGATTATAGTTTCAGGCTTAGAAAAATTAATTAGTAGCAAGCCCTTCCTCCTTCGCTTTTCTGATTCACTTCCTCAGAAGGAAATTTTCTTAGACCACATCATGTCAGGCATAGAAAATGTATGGCTTATTTGGGATCTTCTCCACTAGCTTTAACCTTTTTCTCATCTTTTTGTTTTAATTGTTTTAGAGTTTAGAAACTGCTGTTCTAACTTGTTTCTAATGTGTAAACTCATTTCCTATGGATCTTTTTTTGTCTTCTTGGTTTTCAAGACAGGGTTTTTCTGTGTATCCCCAGCTCTCCTGGAGTTCCCTCTGCAAACCAGGGTGACCTCAAACTCAGAGATCTTCCTGCCTCTGGAAAGTTTTGGGATTAAAGTCATAAGACCCTCACCTGACTGGATTTGTCTTTTCTTTCTTAGTGGTGCTGGTTACTGTACCAAGGGCCTGTGTGTGCCAGGCAAGCTCTTCGTTATCCAGCCACATTTCCAGCTTTGCTCTGATTCTTATAACTTGATAGCACCTAGTTAAAGGAAGAAAAACTGTACAAAAATCAACCCCCAGGAAGTGATGATGTCTGTATGAAGGAAGGTAGCAACATGGAGCTAATGACTTTGATTGTTTTAATTGGACTGAATGCTATCTCAGCAAACACAATGCCAGGTGGTGGTAGTCAGTGATCCTGGCATTAGGGAAGCTTTGGCAGGGAGAGTATGAGACTCTGTTAGCCTAGTCTATAAGGTGAGAACCTGTGTGGGAAAAAATGCCCAAGTGAAGATCTGAGGAGATGTGTTCTTTTCCCTACCCTAG
Seq C2 exon
GTTATCTGACTCTAGAAAAAGAACTCGCACGGGAAGATCGTGGCCTGCTTCAATACCACATTTGCGGAGAAGAAGAGGTCGCCTTCCACGAAGAGCACTCCATACTCAGAACTCAGAAGTTGTAAAAGATGATGAAGGCAAAGAAGATTACCAGTTTGAAGAACTTAACACAGAAATCCTGAATAACTTAGCAGATCAGGAGTTACAGCTCAATCACCTGAAAAACTCCATCACTAGTTATTTTGGTGCCGCAGGTAGAATAGCATGTGGAGAGAAATACCGGGTTCTGGCTCGCCGCGTGACGCTGGATGGAAAGGTGCAGTATCTCGTGGAGTGGGAAGGAGCGACTGCATCCTGACTGTAGGACTAAGCCTTGTGTTCACTGCCTCGTGCTCTGTTGGTACAGTTCAAAAAAGGTGTGGGCTTCATTATCTTTCTTAGAAAAACAAACAGAAAACACAAAAATACTCACAAGAGGAGAGGATACTGGCCTTAACATGTACTTGTCAATGTTACGGATATTGTCATAAAAAGATATCTTTTAAAAATCAGAGGAGAGACTTAATTTTTTTAAATCTTAAGATTTGTAGACTGTTTCTAGGATAGGATATTAAACATGATTCAAACCCATGCATGGTGTTAGATACTTTTTATAATTATTCCATTGAGTCAATTTTTGTGATTAGTGGTTATCAGAGCAAACAGATCATGTAGATAGCACAAGTATTTGGAGAAACATTGTGTGTTTTGTTACCAAAATGTTGGAAAGATTTATTTCAATACCCTTTTAGATTTCATAAAGTACAGTGTATATAATGTCTACTGAAAGACTGTAAAATATTGAAATTTCTTTCAAGCAAAATGTAAAAAATATATTGAGCCTGTAAATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]