BtaINT0096230 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43382092-43382607:+
Coord C1 exon
chr16:43382092-43382214
Coord A exon
chr16:43382215-43382424
Coord C2 exon
chr16:43382425-43382607
Length
210 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTGTCCCCTTTCTGATCCAGGTG
3' ss Score
11.7
Exon sequences
Seq C1 exon
GCCCTCATCTACCCACTGACAGTGGCCTCCAAGTCCACCACCACAGCCCGGCACAACGCAGCCAACAAAATCCTGAAGAACATGTGCGAACACAGCAACACCCTGGTGCAGCAGGCCATGATG
Seq A exon
GTGAGTCCGGGCAGACTCGAGGCACCAAGCAGAGGTCTCGAATGAGACACCTGAGCCACCAAGCAGAGGTCTCGAATGAGACGGCCTTTCTTTCTCAGGGCAAGGCCGTGTACTCCCTCTGACGGCAGAAGTTCCTCCTGTTTCTCCGAGACGGGTCTTTCTGAGCTTAGCTCACCCTGAGCACGTCCCTCTGTCCCCTTTCTGATCCAG
Seq C2 exon
GTGAGTGAGGAGCTGATCCGAGTGGCCATCCTCTGGCACGAGATGTGGCATGAAGGCCTGGAAGAGGCGTCTCGCTTGTACTTTGGGGAGAGGAACGTGAAAGGCATGTTCGAGGTGCTGGAACCCCTGCACGCCATGATGGAGCGGGGACCCCAGACACTGAAGGAAACATCCTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087716=Rapamycin_bind=PU(57.0=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCATCTACCCACTGACA
R:
TGTTTCCTTCAGTGTCTGGGG
Band lengths:
294-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development