RnoINT0095479 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165355042-165355735:+
Coord C1 exon
chr5:165355042-165355164
Coord A exon
chr5:165355165-165355552
Coord C2 exon
chr5:165355553-165355735
Length
388 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCCTCCTCCCTTTAATCCAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCCTCATCTACCCCCTGACGGTGGCTTCTAAGTCTACCACCACAGCCCGTCACAATGCAGCCAACAAGATCCTGAAGAACATGTGCGAGCACAGCAACACGCTAGTCCAGCAGGCCATGATG
Seq A exon
GTAAGTCGTGAGGCAGCAGCCAGGAGGGTGGGTGGTTGCTTCTCTCCCTCATGGCACATGCTGTGTCCTCTGTCTCCACGTCAGACCTCGCTTTGGTGGCCTTTTCAAGTGTTCTCTGTTTGCTTAGGCCCTCATCTACCCCCTGACGGTGGCTTCTAAGTCTACCACCACAGCCCGTCACAATGCAGCCAACAAGATCCTGAAGAACATGTGCGAGCACAGCAACACGCTAGTCCAGCAGGCCATGATGGTAAGTCGTGAGGCAGCAGCCAGGAGGGTGGGTGGTTGCTTCTCTCCCTCATGGCACATGCTGTGTCCTCTGTCTCCACGTCAGACCTTCCCAGTCGTAGCTTCCTGTGGTGTTTCCTTCCTCCTCCCTTTAATCCAG
Seq C2 exon
GTGAGTGAAGAGCTGATTCGAGTAGCCATCCTCTGGCATGAGATGTGGCATGAAGGCCTAGAAGAGGCCTCTCGCTTGTACTTTGGGGAGAGGAACGTCAAAGGCATGTTTGAGGTGCTGGAGCCCCTGCATGCTATGATGGAACGCGGTCCCCAGACCCTGAAGGAAACGTCCTTTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087716=Rapamycin_bind=PU(57.0=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTACCCCCTGACGGTG
R:
GGACGTTTCCTTCAGGGTCTG
Band lengths:
294-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]