GgaINT0133938 @ galGal3
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4142339-4143245:-
Coord C1 exon
chr21:4143123-4143245
Coord A exon
chr21:4142522-4143122
Coord C2 exon
chr21:4142339-4142521
Length
601 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTTTCCTGATCTGAAATAGGTA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GCTTTGATCTATCCTTTGACTGTGGCATCTAAATCCACAACCACTGCTCGCCACAATGCTGCGAATAAAATCTTGAAGAACATGTGTGAGCACAGTAACACGCTGGTGCAGCAGGCAATGATG
Seq A exon
GTGAGTGCTTAAGTGTACCATAAGGTATGTGAGGTTTCAGGTACAACAATACAAAAATGACTGTTCAATGTTAATTTTGTTCAAATATAAGGTTTTTTTGTTTTGTTTTTAATTTGGAAGAGCTTAGTGTCAGCATGACTTCAAGAGAATAATACAAAATGAGCCATAACATTCAGACAGAGTTCTCATGTGTCCTTATGAATAAAGATGGAATAAACAAAGAGTTGTTTTTCCCACAGTGATATTTTTGCTTAATGAAAAGTGGAAACAAAACCTTTCATTTAATTCAATTGCCATGTAATTTAATTCAATTGCTCAAGGTTTTTATGAATAAATGAAAACTAATGCTATTAGGCCAAGTTACACAAATATACACAGAATTTCAAAGGCAACAAGTTCAGTGAGAAAAGCCTGATCATCATCTTACAGGAAAAGATAGAACAAGCTTGTGGGAGTTTTTGTAGCTCCCTCTAGCTGATAGCAACAAATACTTCGTAACCATTGGAGAAGAAAGTCGTTTCACATTTTTAAGTCAGCATTCATTCATAATGGCTAGGGATTTTCTTGAGTATTTTATCTTTTTTTTCCTGATCTGAAATAG
Seq C2 exon
GTAAGTGAAGAGCTAATCCGTGTGGCGATCCTATGGCATGAGATGTGGCATGAAGGGTTGGAAGAAGCATCTCGTCTGTACTTCGGAGAAAGAAATGTGAAGGGAATGTTTGAGGTGCTGGAACCACTTCATGCAATGATGGAGCGTGGGCCTCAGACTTTAAAAGAGACATCCTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087716=Rapamycin_bind=PU(57.0=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCTATCCTTTGACTGTGGCA
R:
TGATTGAAGGATGTCTCTTTTAAAGT
Band lengths:
302-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]