DreINT0098842 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46106290-46109562:-
Coord C1 exon
chr8:46109440-46109562
Coord A exon
chr8:46106473-46109439
Coord C2 exon
chr8:46106290-46106472
Length
2967 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CTGTTTCTACCCATGTTTAGGTG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCTTTGATTTATCCTCTCACCGTGGCCTCCAAATCCACAACCACTGCCCGTCACAACGCAGCCAACAAGATCTTGAAGAACATGTGTGAGCACTGCAACACGCTGGTCCAGCAAGCTATTATG
Seq A exon
GTATGAAAACACACTACGTTTGGCTGTCTATGAAGTAAATGTTTTATTAGGTACACAATGGCAATATTTACAGTCTTGGAAGCTATTTTGCTTCCTCTTTTCTGCTAGATTTTGCTCTCAGACAAAATATAAAGAATGAATTGACATTTCCTCAAATCATATAAATAATGTTAAAGCTCGCATGTCAAATCAAGCCTCGAGCCATCATAAAATTGTAGTTTCTGCTCTGTTACTAATAGGAATTGAAATATACCATGTTCATCATTGGAAATACGGTATTATTTATGTATTTTTTATTATTAATTTTAAATGATTAAAAAAACCAATTGATCTTGGTTTTATTAATTCAGCTAGTGAGTTTCTCTGAGAAAATCCTGAGAATGAGACTTACAGTATAAAATAATTAAAAGCTTGTTTGATATGAAAGGAAGGGTTGCCAGGTTTTGTCAACAAAACCAGCCCAACGGACAGTGAAAACAAGGCCAAGACTTGCTAATGGCCAATCAAAACTATCCCGATAATATCAAAACTCAAAATTTGCCACTGCCCATTTGTAAAATAAATTTTTACAGCAATGTAGGCTTTATACATGGTTTGTTCTTTAAAAAATAACTGTATATTAGTAATCATAAAGATTCTGTTATCATAAAAATCATCTCACCTTAAAGTAAGGTAAATACATCCCCTTAAAGGAAAATTCTGCCATGAAACGAAAGTTAAGCTTGTTTTTTTCCCCACATTTACCTGTAAGGGTCCTGAAATTAGAAAGAAATGTAGGGCGGTCCACAATTTCATCCTATGAGAACCAATTGGATCATTGGAAGTTGGGTGTTGCTAACAAAATGAAGGAAGATTGACCAATGGATGAAGGCAGAGCAAAAACGAGACACGCCGTGATAGCCCCGCCCTAAGGACATTCCATGTGACCAAAAGTGAAGAAATGTCGTTTGGAGGAGGCAGATGTGATTACATATTCTGAGGGCAAATTCATTTTTACAAAATAACAAAGTGCACAGATACATTGTTTATAACAAGCATTAATATTTACAAATAAAAATAAGAAGAGTAAATTTAGATTTTATGTAAACCGCAAACTTGAGAAATAGATTTTAAATTAAATGTTTTCAAAATCTAAAATAAAAAATCAAACAAATTTGTTGCGGCGCGGGAATAAATTTCTGATTAAAACGAGGTAGCGGTTGGTAACTTTGATGTAATTTGAACGGGAGCAGGTGGTCTAACAATAAAGCGCTCCCAAGTCCTGACGTTATTTCGGAACAGCATTTCTGTGATTTCCTCGTTTTTATTGAACAGCCACTGCTCATGACTGTTAAACATGCTGAACGCATGACCAGTGCTTTATAACCAGTGCTTTCTGCACATGCTTTTTTCCGCACAGTCTGTGCGTGCAGCATCTTCATAACGGTCCTCAGAGAGGGCTTCACCAGTATGGCAGAGCAAAGTGAAGATGCGCTGCCCTGCAGCTTATATTAGAAAACTGTCAGTTTACTATTCAGAAACCCACATCAGGCAAGTCTGATGTATGGGAGTCTTTTTTATGCGTCGTAGATGCAAATGGAAAAAATGAGGGCACACTTTATTTTGATGATCCGTTTGGTGAATTTAAGTTACATTGCAACTAATTCTCATTAGATTGTAAGTAGACTGTTAGGTTGGGGTTAAGGTTAGTGTAAGTTGACATGTACTTGCAAAGTTTCTTATAATCATTTAAATGTCTGTTGAAGAGCAGTATCAGCAGATATTATACAGTCTACTAACACTCAAATGAACCATAAAAATATAGTATTACCAAAAATGATCCTTTGAGTGATGTGATAATACCTCGAGTTTTTACCCCTCTAGCAGTCTGAAGACTGTGAACCTCAGGTTTAAGGCGACACTAATGTCTTATCACAAAGGGGCAAACAAAACTGGCATTTAGCCTACAATCCTTTCACAACCTACACTTTTATCTGTTACCGCTCTCTTTTGGTAAACTCCATTTAATCGTGAGATTTTGGAAACAAGATCTAAATTTGGTGGGAGAGATTGGGTTGGGTAGAATATTATTCTAAGCGGGTAGCAGGTGAACAAAGGCTGAATATACAATGGGAGCGGTCGGGTGCGGAATAAAACCTTGCAGGAGCTAAAAAATTAGTTCAGCGCAGACCTCCAACTTAAGTTATTAATTCCATTGTAAATCGACAGACTTTGTTCTACTTCTGCAGTTAATTTTATTTAGCAACAATCCTGGAGAGCCCTGCCAAGCTGTTACCATGGAAATGAAAACAGCCACCCACTTCCTTTCATCGTCCACATTTTTTTAGTATACATTTGGTAGAGTAATACATTTCAATGAAACCATTCATTCATTCATTCATTCATTTTTGGCTTAGACCCTTTATTAATCTGGGGTCGCTACAGCGGAATGAACCACCGACTTATCCAGCACGTTTAATGCAGCAGATGCCCTTCCAGCTGCAATCCATCTCTGGGAAACATCCATACACACTCATTCACACCCATACACTACGGACAATTAAGCCTACCCAATTTACCTGTACTGCATGTCTTTGGACTTGGGGAAGGGGGGGGGGGACCGAAGCACTCAGAGGAAACCCACGGGAACGCAGGGAGAACTTGCAAACTCCACACAGAAACGCCAACTGACCCAGCCGAGGCTCGAACCAGCAGCCTTCTTGCTGTGAGGCGAGAGCACTACCTACTGGACCACCGCGTCACCCCAATACAACCACAAAAATACAAATAATAATTTAAGCCACGGAACAAAAAACAACCCAAGTAGTTAAAAGTAATCCAACTCGAGGACTTGGCAGCCATGATGGTGGGTATGGTAGCAGCTTTGGTAATTGCTATTTTTAAGCTTAGCCAAGGATAAAAACACAATCCGAAACATCTGCCAAAAATCCAAATCCCCACATGAGCACTGTTTCTACCCATGTTTAG
Seq C2 exon
GTGAGCGAGGAGCTTATCAGGGTCGCTATTCTCTGGCATGAAATGTGGCACGAGGGGCTGGAGGAAGCGTCACGTCTATATTTTGGAGAGAGGAACGTCAAGGGAATGTTTGCCGTTCTGGAGCCCCTCCATGCCATGATGGAGAGAGGACCACAAACCCTAAAAGAAACATCATTTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087716=Rapamycin_bind=PU(57.0=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]