MmuINT0102072 @ mm10
Intron Retention
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148538463-148538910:+
Coord C1 exon
chr4:148538463-148538585
Coord A exon
chr4:148538586-148538727
Coord C2 exon
chr4:148538728-148538910
Length
142 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTTTCTCCCTTTAATCCAGGTG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCCCTCATCTACCCCCTGACGGTGGCTTCTAAGTCTACCACCACAGCCCGTCACAATGCAGCCAACAAGATCTTGAAGAACATGTGTGAACACAGCAACACGCTGGTCCAGCAGGCCATGATG
Seq A exon
GTGAGTCGGTCTTGAGGCAGCAGCCAGGGGTGTTAGTGATTACCTCTCTCCCTCGTGGCACATGCTGTGTCTTCTGTCTCCAAGCCAGACCTTCCCAATCGTAGCTTCCTGTGGTGTATCTTTCTTTCTCCCTTTAATCCAG
Seq C2 exon
GTGAGTGAAGAGCTGATTCGGGTAGCCATCCTCTGGCATGAGATGTGGCATGAAGGCCTGGAAGAGGCATCTCGCTTGTACTTTGGGGAGAGGAACGTGAAAGGCATGTTTGAGGTGCTGGAGCCCCTGCATGCTATGATGGAACGGGGTCCCCAGACTCTGAAGGAAACATCCTTTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991:ENSMUST00000103221:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087716=Rapamycin_bind=PU(57.0=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCTACCACCACAGCCCG
R:
CCCGTTCCATCATAGCATGCA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types