BtaINT0097137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14240341-14242584:-
Coord C1 exon
chr25:14242372-14242584
Coord A exon
chr25:14240486-14242371
Coord C2 exon
chr25:14240341-14240485
Length
1886 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTGTGTTCTTGCTGCCCAGGGC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCTGGACGACGAAATGGCTCAGAAGAACAATGCCCTGAAGAAGATCCGGGAGCTGGAAGGTCACATCTCAGACCTCCAGGAGGACCTGGACTCAGAACGGGCCGCGAGGAACAAGGCGGAGAAGCAGAAGCGGGACCTGGGGGAGGAGCTGGAGGCGCTGAAGACAGAGCTGGAAGACACGCTGGACAGCACAGCCACCCAGCAGGAGCTCAG
Seq A exon
GTGAGGAGCCCCCACCCGGCCGGCCGGCCGCTCCGATGGGTCAGGACGGCTGGTGGAAAGGGGCAAACCCACACAGATCCTGAGTCACGGGGCTCCTCAGGCCCTGCGTTTATCGTGCTGATTGCATTTTGCTTTAACTGATGTAAGCATGCTTAATTTTTTTTTTAAATTTTGTTGAAATATAGTTGATTTACAACGTCATGTTAGTTTCAGGTATACAGCAAACTGATTCAGTTCTGTTCTTAACAAAAAGGACATCTCAGAAAACTGAGTAATAAATATTTCTGTCTAATTAAGCCACATGGATACCTAAAAGGGCCCACATATCTTCCTACCCTGGAGATGATTAGCTACTTGGCATTTGGGAGTTTCCTGTTACCCAAAGAGGGTAATTGGAAAAACTGGATTTTTTAATTATTTGAAAATACTAATAATTTATTATAGATGTTATAAATACTAACATCAAATCTAAATATAATAAAACATTTTAATATGTCGGAACCATGAAAATCAACTGGTAAATTAAGCATGCTTATTTTTTAAATTTATTTGTTTTTAATTGAAAGATGATTGCTTTACAATATTGTGTTGGCTTCTGCCATACATCAGCATGAATCAGCCATAGGTATGCATATGTCCCCTCCCTCGTGAACCTGCCTCCCACCTCCTACCCCATCCTACCCCTATAGGTTGTTACAGAGCCCCAGTCTGAGTTCCTTGAGTCATACAGCAAATTCCCGCTGGCTGTCTATGAGACATATGGCAGTGTGTATGTTTCCATGTTACTCTCTCCATTCGTCCTACCCTCTCCTTTCCTCACCCCTTCCCGTGTCCATAAGTCTGTTCTCCATGTCTAATCATGCTTATTTTTTAATCTTGTCTTACATCACAGTAGGAGGATATACTCAATTAGAGAATGACTTGAAAACTGTAGGAAAGTTAGATACCAAAAGCATTGACCCCAGTCCCACCACGGTTAACATTTTGGGGAATTTCATTCCTGTCTTTTCCGGAGTGTGTATAAGTTTTGCATTAAATTTTCAAAATAACATTTATCAGATTGGTCTTCACTTGAAGTGTCACTGCTGGCTAACTGACAATACCCAACCAAAAAGCAGAAACAAAAACGGGTCACCTGCCAGATAATGAATGCCGACTTCAGTGAGACTAGGTCATTTATTTATTCAGCAAACACACAAGTGTGTGTTGAGTGCACCCTGTGCCAAGTGCTGTGCTAACATGGAGATTTACTTCCCACGTTTTGGGTTTTGTGCTACATCACTTAGCTGGGCCTAGAAGCCAGCACAACTTTCTACCCCCTTTGCACTGGCCCAGAGCAGTGGCTCATAGCAGTGAACTCAGACTGTTTGGGTTCAAATTCTTGGTCAGTCACACTATGGTTTTAATACCTTGGGCAAGCTGCTCACTCTTTCTTAGCATTTGTTTCCTCATCTGTAAAACAGAAATAATGATACACTTGCCTCTAAAGGTCACTCTGAATATTCTATCAGATGACATATACCCAGAACTTAGGTCAGAGCTTGGCACATAGCGTATCCTCAGAAAGTAAAGCTAATGTTAATATTTACAGAACAGTCTGCAACTCACTTTGCATTCTTCCAACACTATCATGTGTTATTTTGTGTATTTGTTTGTCGGCCCTGGGAGATTCTGGGAGGTAGCATGCTCCTCTTTTTTTATGGCTACCTCCTTGTTTTGAGGAAATTCCAGGTCCAGAGAGGTTAGGTGACTCACCTGAGGTCACACAGCTTGGGAGGGATAGTGACAAAGACTTCAGTTCCAGGTCCCGGGAGACCCCTTGCGCCTCTGCACTGAGGCCCGTCTCTGTCTCCTCGGCTGCCAGCCTCTGTGTTCTTGCTGCCCAG
Seq C2 exon
GGCCAAGAGGGAGCAGGAGGTGACGATGCTGAAGAAAGCCCTGGACGAGGAGACACGGTCCCATGAGTCTCAGGTGCAGGAGATGAGGCAGAAGCACACCCAGGTGGTGGAGGAGCTCACTGAGCAACTGGAGCAGTTCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=NA C2=0.939
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGACGAAATGGCTCAGAA
R:
CTGCTCCAGTTGCTCAGTGAG
Band lengths:
346-2232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]