MmuINT0103272 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14211226-14212730:-
Coord C1 exon
chr16:14212518-14212730
Coord A exon
chr16:14211371-14212517
Coord C2 exon
chr16:14211226-14211370
Length
1147 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ACTGTGTTCTTTTCCCCTAGAGC
3' ss Score
11.96
Exon sequences
Seq C1 exon
GCTTGATGAAGAGATCGCCCAGAAAAACAATGCCCTAAAGAAGATTCGCGAGCTAGAGGGCCATATCTCAGACCTACAAGAGGACCTAGACTCAGAGCGGGCTGCCAGGAACAAGGCCGAGAAGCAGAAGCGAGACCTGGGGGAGGAGCTGGAGGCACTCAAGACGGAGCTGGAGGATACGCTGGACAGCACAGCTACCCAGCAGGAGCTCAG
Seq A exon
GTACTGGAAGCCCACTGACCACAAGCAGATCTGGAACCAGTAGCCTTCCTGCTTGTGTCTAGAATATGAGTCTGTTTAATTCTACCTGCAGGAGAGTAGTAGTGCAGAATTCAAGAACAACTTAAGCATGATAGAAGAACAGGTGTCAAAAAGGATATTTCCTTCAGTTCCATCCATAGTTAGGGTTTTAAAATAATTCCTTCCTCTGTCTGTATGTGTATATGTATATATATTTTATGTTAAATTTTAAAAATAACATTTATCACATTGGTCTCCAATTCAAGAGTCACTATAAGTAAACAGAAAGAACTGAACAACCATATCCCAGAGAATATGTTGTTTCTGGTGAATATATGTTATTTAATAAGCATACAGATCTTTTAAACATATACTATGGGAAGGGTCTCTGTTAACTGTGACCCTGTATTCAACACCCTTTGGAGTTTGTACATGTACCAAATGTTAGTGTCACCTTTTTGTTCTTCTTCTACCTGGCTGGAGATATAGACAGTGGCTAAAAGTCAGGCTGGCTTCATGTTGTAGCTCTGTCACAGAATGGTTAAGACCCTGTGGGTAAGCTGTTTCCCCGCTTAGCCTGAAAATGGCATCACTACCTCCTAGAGTTGATCTGAGAATGAGATGCTATGTATGGAAAAACAGGTCCAGTTGGGGTTGATGGCTTATGCTTATAATCCTAGCACTCAGAAGTGGAGGCAGGAGGATTGTGAATTTCAGACTAGCCTAAGCTATGTAGTGAGTGAAATCCTGACTCTAAAACAAACAAAAAAACAAACAAACAAACAAATAGATAAAATCTTAGTTCAGGCCCCAGCATATAGTAAGTGCTGCATAAATCTGAGCAGTGTTATTATTTAGGGGACATCTGTAGATCACAGAACAGACACATTCTTGCTCATAGCTTGTATGATGGTTTGCTACTGTTCTGGGAGCAGGTAACACCCTCCCCATTTCACAGCTGAGACAAAACTGCAGGACTAGAGAGATTAGGCAGGTTGCTGTAGGGCACACAGCAAGGGAGGACTTCAGCTCTGGGTTCCAGGAGACCTCTTGTCCCCTTGCACAGTACTGTCACAGGTCAACCTCTGTCTCCTGCCTAAGTGTCAACCACTGTGTTCTTTTCCCCTAG
Seq C2 exon
AGCCAAGAGGGAACAGGAGGTGACAGTGCTGAAGAAGGCCCTGGATGAGGAGACGCGGTCCCATGAGGCCCAGGTCCAGGAGATGAGGCAGAAGCACACACAGGCAGTGGAGGAACTCACAGAGCAGCTGGAGCAGTTCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGATGAAGAGATCGCCCA
R:
TTTGAACTGCTCCAGCTGCTC
Band lengths:
355-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types