GgaINT0015072 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7636808-7637592:-
Coord C1 exon
chr14:7637380-7637592
Coord A exon
chr14:7636953-7637379
Coord C2 exon
chr14:7636808-7636952
Length
427 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTGTGTGCGTCTTCTTGCAGAGC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GCTTGAAGATGAAACTAGTCAGAAGAACAATGCCCTCAAGAAGATCCGAGAATTGGAATCTCACATCTCTGATCTCCAGGAAGACTTGGAATCTGAGAAAGCTGCAAGAAACAAAGCAGAAAAACAGAAGAGAGACCTAAGTGAAGAGCTGGAGGCTCTTAAGACAGAGCTTGAAGATACTTTGGATACCACAGCCACCCAGCAAGAGCTCAG
Seq A exon
GTATGGAGACTTTGCCCACGGATGGAACAATTCTAGACTCTCATAGTGATGGTCTCCAACTTATAGACAATCTAATTCAGGTTACCCAGATTTTTTTTTTTTTTTTCCTGGAGCTAGGTATCTAATTTTCTATCTTAGGCACCTTAATAATTCAGTCTTGTACTTAACAGTCTAAACTCTTTTCCCCTGATGTTTAACACTTCAGGGACCCCAATTCTGTTAACTGATCTCAGTATAACTTCTTCTGATCTTGTCTGTCATACATCCTGTGAAAACTGTCTCACAGAATTTCTGTAAATTCATTTTTGCATTACCTCTCAACATGAATTATAACTAGACTGAATTTACAACTATGTTGGAATGCCAATTTCCCAGTGACTGGAACACTCCTATGTGCTCCTCTCCATTTGTGTGCGTCTTCTTGCAG
Seq C2 exon
AGCAAAGCGTGAACAAGAGGTCACTGTGCTGAAGAGAGCTTTGGAGGAGGAGACCCGAACTCATGAAGCCCAAGTCCAGGAGATGAGACAAAAGCACACTCAAGCTGTGGAAGAACTAACAGAGCAGCTAGAACAATTTAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(29.7=100),PF093045=Cortex-I_coil=PD(51.7=63.9),PF0157614=Myosin_tail_1=FE(8.3=100)
A:
NA
C2:
PF0003816=Filament=FE(19.7=100),PF0157614=Myosin_tail_1=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAAGAACAATGCCCTCA
R:
CCGTTTAAATTGTTCTAGCTGCTCTG
Band lengths:
342-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]