RnoINT0096360 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:840236-841912:+
Coord C1 exon
chr10:840236-840448
Coord A exon
chr10:840449-841767
Coord C2 exon
chr10:841768-841912
Length
1319 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TACTGTGTTCTTTCTCCTAGAGC
3' ss Score
9.62
Exon sequences
Seq C1 exon
GCTCGATGAAGAGATCACCCAGAAAAACAATGCCCTAAAGAAGATTCGAGAGCTGGAGGGCCATGTCTCAGACCTACAGGAGGACCTGGACTCAGAGCGAGCTGCTAGGAACAAGGCTGAGAAACAGAAGCGAGACCTGGGGGAGGAACTGGAGGCGCTCAAGACAGAGCTGGAAGATACACTGGACAGCACAGCTACCCAGCAGGAGCTCAG
Seq A exon
GTACTGGAAGCTGGGCCTCAGAGGCCACTGACCACAGCAGATCTGAAACCACTGGCTTTCCTGATTGTGTCTAGAATATGAGTCTGCTTAATTCTATCTACAGGAGAGTAGAGGAGCAGCATTCAAGAACAACTTAAGCGTGGTAGAAGAACAGGTGTCAAAAAGAACATTTCCTCTGGTTTCATTCATAGGATTTTAAAATAACTTCTTTGTCTCTATGTGTGCATGTGTATGTATTTTGTTAAATTTTAAGAATAATACTTATCAGATTTGTCTCCAATTCAAGAGTCACTATAAGTAATCACTATAAGAAACAACGAACAACCATATCCTAGAGAATATAGTGTTTGTGGTGAACATAGGTTATTTAATAAGCATACAGATCTTTTGAGCATATCTTATGGGGGGGTGTCTGTTAATTGTGACCCAGTATTCAACACACTTTGGGTTTTGTACATGTACCAAAGGTTAGTCCTGCCTTTTTGTTCCTCTCCTACCTAGCTGGAGATATAGAAAGACAGTGGTTAAACGCCAGGCTCAAAGCCAGGCTGGCTTCATGTTATGGCTCTGTCACAGAATGTTTGGGGCCCCATGAGTAAGCTGTTTACCCCCTTAGCCTGAAAATAACATCACTGCTTCATAGAGTTGATCTGAGGATGAAATGCTAGTATGGGAAAACAGGTCCAGTTGGGTCTGATGGCTCATGCTTGTAATCCTAGCACTCAGAAGTGGAGCCAAGAGGATTGTGAATTTGAGACCAGCCTAAGCTATATGTAGTGAGCAAAATCCTGTCTCCGAAAGAAAGAAAGAAAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGTGGGAGAGGGAGGGGAGGGAAGAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAATAAAATCTTAGCTCAGGCCCCAGCATATAGTAAGTGCTGCATAAATCCAATCAGTGTTCATGTTTAAGGAACATCTGTAGACCACAAACATGTTCTTGCTCATGTCTTGTATGTTGGTTTACCAGCCTTGAGAAGTTCTTGGAGCAGGTACCACCCTCCCCATTTCACAGGTGAGACAAAACTGTAGGGCTAGAGAGGTTAGGCAAGCTGCTATGGGGCACACAGCTAAGGGGAAAAACTTAAGCTCTGGGTACCAGGAGACCTCTTGTCACCTTGCACAGTACTTTCACAGGCAAACCTCTGTTTCCTGCCTAAATGTCATCTACTGTGTTCTTTCTCCTAG
Seq C2 exon
AGCCAAGAGGGAACAGGAAGTGACAATGCTGAAGAAGGCCCTGGATGAAGAGACGCGATCCCATGAGGCCCAGGTCCAGGAGATGAGGCAGAAGCACACACAGGCAGTGGAGGAACTCACAGAGCAGCTGGAACAGTTCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.6=100),PF045827=Reo_sigmaC=PU(18.0=51.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGATGAAGAGATCACCCA
R:
CTGTTCCAGCTGCTCTGTGAG
Band lengths:
349-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]