BtaINT0097203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002580 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr18:56932224-56936488:+
Coord C1 exon
chr18:56932224-56932472
Coord A exon
chr18:56932473-56936275
Coord C2 exon
chr18:56936276-56936488
Length
3803 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATCTCCCTCACCCCGGAAGCTC
3' ss Score
3.15
Exon sequences
Seq C1 exon
CTGTCAGAGTGGCGGCGGCGCCAGGAAGAGGAGGCAGGGGCCCTGGAGGCAGGGGAGGAGGCTAGGCGCCGGGCGGCCCGAGAGGCTGAGGCCCTGAACCAGCGCCTGGCAGAAAAGGCGGAAGTGGTGGAGCGGCTGGAGCGGGGCCGCCGGCGGCTGCAGCAGGAGCTGGACGATGCCACAGTGGACCTGGAGCAGCAGCGGCAGCTCGTGAGCGCGCTGGAGAAGAAGCAGCGCAAGTTCGACCAG
Seq A exon
GTGAGGCACCTTGGGTTAGCCACCTGGGGAACTGGGATGCTCACCCACGCTGCCCGTCACGGTCACCGTGAGCGATCAGTAACAGGTGATGTCACAGCTCAGCTGTGAACCTGCGAGGACCTTCGGGGAAGATGCCTCTTCCCTCTGAGCCCCTGTAGGATAGAACGCCCATCGATCCTGGCTTATGTCTCCTGCCCCCAAATAATTACTGCTGGTACCCAGTGTTACTCCCAAAGGCGTCCTGCAGATACACCAGAGGGTGTACTTAGGAAGGCGAAATGAAATAACACGTCTTGCTTCTCCTGCTGACTCACTGTGGACCTCAGGCAAACTGCTTGTCCCATTTCAGCCTCAGTTTGCCCGTCTAGAAAATGGGGATAAGGGGATTCCCTGGCAGTCCAGTGATGAGGACTCCATGCTCTCAGTACTGTTGCTGTCGTTCAGTCACTAAGTCGAGTCCGACTCTTTTCGACCCTGTGAACTACATCGCTCCAGTTTGATTCCTGGTTGGGGAACTAAGATCCCACAGGCTATGCGGTACAGCCAAAAAAAAAGAAGAAAAAAGAAAAAATTGAAAGTGGGGATAATACTAAGCATCTGACAATGTAAGAATGGAATAAAATTCTCAGAACCCCAGAGCATTAAGATCAGGCAACCCTGAGGTTCACAGCCCAGTTGGGGCCCTTTCTGGCTGTGTGGCTTGGGCAAATTGCACAGTCTCTCTGCCTCATTTTCTTCATCTGGAAAATGGGAGAGTCCTTATTTTTGCCTTCATTTTTGAAAGGAATTTTCACTGGCTGTTGAATTCCAGGTTTTATTCTTTCCACACTGGGAAGAGATCATTCCATGTTCTGGGGCCTCCACTGTTTCAGATTTAAAGTTAACAATCATCTAAATCATGGTTTCCCTGTAGGTAATGTGATGTGGTTTTCTAGCTGGTTCAGACTTTTTCCTCTTTATCTTTGCTTTTTAGCAGTTTGACTATGATATCCAGCTGTGGGGTTTTGTGTTTATTCTACTTCAGTTTGCCAAGCTTCCAACAGCTTTGGGTTAGTGTTCTTAATCACATGTGGAAATCTTCAGCCATTATTTTTTCAAATATTTTTCTGCCCCATTCTCTCTTTCTCCCCTCCTCTTCTCAAACTCCAAATACATGTATGTTCGATTGCTTAATACTATTCCATAGATCATTGAAAAAGTTTTAAAAGAATTAATTTGTGTTTTATATATATATAGACATGGTTAAGCAGGAGATGGCAAGAGTGAACAATGACATTATAGGAATCAGTGAGCTAAAATGGAGAGGAATGGGTGAATTTAATTCAGATGACCATTATATCTACTATTGTGGGCAAGAATCCCTCAGAAGAAATGGAGTAGCCCTCATAGTCAACAAAAGAGTCTGAAATGCAGTACTTGGATGTGACCTTAAAAACGACCCAATGATCTCAGCTTATTTCCAAGGCAAACCATTCAACATCATAGTAATCCAAGTCTGTGCCCTAACCACTGGATGCTGAAGAAGCTGAAATTGACCAGTTCTATGAAGACCTATCGGAGAAGGCAGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAAGCCCATGGACGGAGGAGCCTGGTAGGCTGAAGTTCATGGGGTCACTAGAAGTCGGACACGACTGAACGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAAGCCACTCCAGTGTTCTCGCCTGGAGAATCCCAGGAACGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCATGAAGACCTATAAGGCCACCTAGAACTAACAACAACAACAACAAAAAGATGTCCTTTTCATCATAGGGGATTGGGATGCAAAAGTAGGAAGTTAAGAGATACCTGGAGTAACAGGCAAGTTTGGCCTCGGAGTACAAAATAAAGCAGGGCAGAGGCTAACAGAGTTTTGCCAAGAGAACAAACTGGTCACAGCAAACACCCTCTTCCAACAACACAAGAGGTGACTCATCGGAAAAGACCCAGATGCTGAGAAAGATTGAGGGCAGGAGAAGAAGGGGACAATAGAGGATGAGATGGTTGGATACCATCACCAACTCAATGGATATGAGTTTGAGCAAACTCCAGGAGATGATGAAGGACAGGGAAGCCTGGCATGCTGCCATCCATGGTGTCGCAGAGTCGACACAACTTAGCCACTGAACAGCAACAAATATACATATAAATATATATATTTGCATGTCTTGTAAGTTTTATTGTTCATCAATTGCCATGTCATAAAAAAACAGTGAAGGTTTGAAGTACATTTTAAATTTTATGTATTTTTTTTCCTACTATGACTACAAGAGGAAGAAAGAAAACCCTTTCCTCTCTTGGGTATATAAAGCGAGGGGCTGATCAGTTTGATCCATTTAAGGTTTTTCCTTTTTTTGGCTCAAAATTTCCTTTCATTTAATTTTTTATAAAACTTGAAGTGTAGTTGATTTACACTGTTGCATTAGTTTCAGTTGTACAGCAAAGTGACTCATACATTTATACATGATACATGTATTCTTTCTCAGATTCTTTTACTTATAAGTTACTAGAAGACATTGAGTAGAGTTTCCTGTGCTTTACAGCAGGTCCTTGTTAATTATCTGTCTTATATATAGTAGTGTATATCGGCAACCCACTCCAATATTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCTGTCTACGGGGTCGCACAGAGTCAGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGTGTATATCTGTTAATCCCAGATTCCAAATCTATCCATCCCCCCTTTCCCCTTTGGTAACCGCAGGTTGGTTAGTTTGTTTTCTGTATCTGTGAGTCTGTTTCTGTTTTGTAAATAAATTCATTTAATTACATCATTTTTTTTACAAGATTCCACCTAGAAGTGATATCATATGATGTTTGTCCTTCTCTGTCTGGTTTATTTCACTTACTGTGATAATCTCTAGGTCCATCCATGTTGCTGTAAATGCCATTATTTCATTCTTTTTCATGGCCGAGTAATATTCCATTGTATATATAGGCCACATCTTCTTTATCCATTCCTTCATCCATGGAGATTTAGGTTGCTTCCATGTCTTGGCTATTGTAAGTAGTGCTGCAGTGAACACTGGGGTGTAGATATCTTTTCGAATTAAAGTTTTCTCCAGCTCTCTGCCCAGGAGTGGGGTTGCTCCATCATATGGTAACTCTAGGACCTCCCAGGTGGCACAAGTGCTAAGAACCTGCCTGCCAAAGCAGGAGGCACTGAAGACTCGGGTTCCATCCCAGGGCCGGGAGGATCCCCTGGAGCAGGGCACGGCGACCCACTCCACTATTCTTGCCTGGAGAATCCCATGGACGGAGGAGCCTGGCAGGCTACAGTCCATGGGGTCACAAAGAGTCCGACAGGGCTGAAGCCACTGAGCACTCTGGCACATGGTAACTCTATTTTTAGTTTTTAAAGGTACCTCCTCACTATTCTGCAGAGCAGCTGTACCAATTTACATTCCCATCAACAGAGGGATCCATTGAAGAGCGAGCTGGTCTGGGACCCAGTGGAAACTTTAATCCCTATACCTCCCTCTTGTGTCTCTGCCTCTGTCTGTCTGTCTGTCTCTCCGTCCTTGGCCCCTCTCTCTTCCCCATTCCCTTGTACACTCCTTTTAGCTAACCTGTGTCCCCCACCCCATCTCCCTCACCCCGGAAG
Seq C2 exon
CTCCTGGCGGAGGAGAAGGCGGCAGTCCTGCGGGCGGTGGAGGAGCGGGAGCGGGCGGAGGCCGAGGGCCGCGAGCGCGAGGCCCGGACGCTGTCACTGACCCGGGCCCTGGAGGAGGAGCAGGAGGCGCGCGAGGAGCTCGAGCGGCAGAACCGTGCGCTGCGGGCCGAGCTGGAGGCGTTGCTGAGCAGCAAGGACGACGTTGGCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002580:ENSBTAT00000003343:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=NA C2=0.549
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.1=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development