HsaINT0107606 @ hg19
Intron Retention
Gene
ENSG00000105357 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:23212]
Coordinates
chr19:50784851-50789951:+
Coord C1 exon
chr19:50784851-50785099
Coord A exon
chr19:50785100-50789738
Coord C2 exon
chr19:50789739-50789951
Length
4639 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CATCTCCCTCAAACTGGAAGCTT
3' ss Score
1.09
Exon sequences
Seq C1 exon
CTTTCCGAGTGGCGGCGGCGCCAGGAGGAGGAGGCAGGGGCACTGGAGGCAGGGGAGGAGGCACGGCGCCGGGCAGCCCGGGAGGCCGAGGCCCTGACCCAGCGCCTGGCAGAAAAGACAGAGACCGTGGATCGGCTGGAGCGGGGCCGCCGCCGGCTGCAGCAGGAGCTGGACGACGCCACCATGGACCTGGAGCAGCAGCGGCAGCTTGTGAGCACCCTGGAGAAGAAGCAGCGCAAGTTTGACCAG
Seq A exon
GTGGGGCACCTCAGTTCACCCAGCCGGGGAATCAGCAAGTCCATCTACGCTTCCCATGGTCGTTGTGAGGAACCAGTAATCCGTGCTGTCACGGCTCAACTAGGCAGTTGTAGTGGACCAGGAAGCAAGACCCTTCTTTGCTCTGGGCCTCTGTAAAATAGGACATCCCTCTGTCCTGATTCATGCCTCTTGCCACAGCATAATTCCTCGTAGCACCCACTTTTACTTTCAGAGCTGCCCTGGTTTTTGGATGACAAAATATACGAATACCTTCAGTACCCCAGAGATTGCTTATGAGAATTAAATCAAATAACTCATCTCACTTCTGCTGATTCACGGGGTACCTCAGGCAAGTTGCTTTTTCCATCTCAGCTTCAGTTCGCCCATCTGGAAAATGGCAATAATACCAAGCATCTGGCAGCCTGAGGATGAAATAAAAATCACAGAACCTTAGAGAGTTCAGATCAGGCAATCCTGAGGTTCAGATCCCAATTCGGCCTCTTGATGGCTGTGTGGCTTGGGCAAATTGCTCAACCTCTCTGTGCTTTATTTTATTCATTTAGAAAATGCAGTGTGAAGCTGGGCACTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATTGCCTGAGCTCAGGAGTTCACAACCAGCATGGGCAACACGGTGAAACCCCGTCTCTACTAAAATACAAAAAAATTAGCTGGGCATGGCGGTGTGCGCCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACTGGAAAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCGGCCTGGGTGATAGAGCAAGACTCCATCTCAAAAAAAAAATAAAAAATTAAAAAAAATTTTTTTAAATTGTCATTTCCCTGTAGGTGGTGCAGTATGTTTTTCTAGCTGACTTACGATTTCTCTCTTTATGTTTGGTTCTTAGTGGTTTGACTGTGATATGCCCAGCTGTGGGTTTTTTGTATTTATCCTGCTTTAGATTCACTGTGCTTCCTGTAGCTGTGGGTTGATGTTTTTGATCAAATGTGGAACATTTCAGCCATTATTTCTTCAAATATTTTTATCTCCCACTCTCTCTCCTTCCCCTTCTTCTTGGACTCCAAATACATATGATTTGATTGTAATACTCTTCCACAGGTCATTGAAGCTTTATTATTTTTGGCATCTTCTGGAATTTTATATAAATTATTTTCACATAAATCTCTTTTGGGATGGGCTTATTTTACTCAAAATAATTTTTTTTTTTTGAGACAGAGTCTCGCTGTGTCACCAAGGCTAGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCACCTCTCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCATGCCTGGCTAATTTTTGTGTTTTTAATAGAGACGAGGTTTCACCATTTTGGCAAGGCTGGTCTCGAACTCCTGGCTTCAAGTGATCCACCCACCTCGGCCTCCCGAAGTGCTGGGATTATAGGAGTAAGCTACCGCACCCAGCCTCAAAATAATTAGTCTGAGATCCATCCATATTTTTGCATATCAATAATGTATTCCATGTATCAATAATGTATTTTTGCTGCTGAATATTATTCCTGTGGTATAGATCAGCCACATTTTGATATTCATTAACCTTTTGATGAACATTTGGGTTTTTTTCCAGTTTTTTTCTAGTTATGGATAAAACCTTAGTCTTTCTCAAAGGTGGTTTTAATTAACATTTCCCTAATGACCAGTGACGTTGAGCATCTTTTCATATGCTTATTTGCCATCCATATATCTTATTTGCTGAAGCTTCTGTTCAGATCTTTTGCCTATTTGTTAATTAATGTTGTTTGTTTTACTATTATTGAATTTTGAAAATTCTTTATGGGCCGGGCACGGTGGCTCATGCCTGGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGGTAGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAATCTGGGAGGCGGAGGTTGTGGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAACAAAACAAAAAACAAAAAAAAAACAAAAAAAAAGAAAGAAGTTATTTATGTATTCTAAATGCAAGTTCTTTATCAGATATATGCTTTGCAAATATTTTTGTCCAGTCTGTGGCTTTTCTTTCCATTCTGTTAGAGTCTTTCAAAGAACAGAAGTTTTTAATTTTGTCCAATTTATCAATTTGTTGTTTTATAGATTGTGCTTTTAGTATTGTATATAAGAAATTTTTGCCTAACTCAAGGTCACAAAGGTTTTATCCTGGTTTTTTTCTTGTTTTCTTTTTGTTTGTTTGTTTGTTTTGTTTTTTGAGACGGAGTCTTGCACTGTTGCCCGGGCTGGAGTGCAGTGGCATGATCTTGGCTTACTGCAACCTCTGCCTCCTGGGGTCAAGCGATTCCTCCTGTCTCAGCCTACCAAGTAGCTGGGATTACAGGCACATGCCGCCACACCCGGCTAATTTTTTTATTTTTATTTTTTTTTTATTTTTTATTTTTAGTAAAGACAGGGTTTCACTATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCACTGCACCCGGCCTATCCTGTTTTTTTTTTCTGGAAGTCTTCCAGTTTCAAGTTTACATTTAGGTCTGTGATTTATTCTGAGTTAATTTTTACATATGATGCTATCATGGCTCCATGTTAATTTTTGTGAATATAAATATCCAAGTATTCCAACACTGCTCTCCACTGACTTGTTTTTGCATATCTATTGAAAGTCATTTTTCTTCTTCTTCTTCTCCTCCTTCTTTTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTTGCTGCAACTTCTGCTTCCCGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCGAGTGGCTTGGATTACAGGTGTGCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGTGGTCTTGAACTCCTGACTTCAGGCGATCTGCCTGCCTCAGCCTCCCAATATGCTGGAATTACAAGCATAAGCCACTGCACCAGCCTTTTCTTCTTATTTGAAGTTATTTTGCCTCTTCTAGTTCCTTTGCATTTCCGTATGTATTTTAGAATCAGTTTGTCAATTTCTACCCCAAAACAAAAAGCCTTCCAATTTGGAACTGTGTTGAATCTATACAACGGTTTTGGAAGAACTGACATCATAACAATATTGAGTTTTCTCACCGAGGAAGAGGGTATATACGTCCATTGAAATACCTTAGAAATGTTTTTTAGTTTTCAATGTACATCTTTCACATCTGCTGCCAGATGTATTTCTAAGTATTTCATGGTTTTATGGCTATTTTAAGTGATGTTGCTTTCATTTCCATTTTTGATTGCTAGTATATAGAAACAATAGATTTTTGTATATTGATCTTGTATCCTACAATCTTGGCTAAACTCACTTACTAGTGCTAATATAGTTTTTATATATTTCATTGGATTTTCTACATAGATGATCATGTTTTCTGTGAACAAAGGCAGTTTTACTTCTTTCTTTACCTTTTCTTTACCCTTCTAGGACTCCAAATGCTTGTATGTATGACTGCTTGGTACTTTTTTCAGGTTGTTAAAGTTCCATTAATTTCTGTTACAATCTTCTTTCTTTTTCTTTCTTTGCTCTGTTTGGATAATTTATATTGACCTGCTTTCAAGTTTACTGATTCTCCTGATGTGTCCAGTCTGCTACTAATTTCATCCAGTGACTTTTTTATTTCAGATATTTCATTTTTCAGTTCTGGCATTTCTATGTGGTTCTATTTTACAGTTTCAAATCCCTCCTCAAATAACTGCCTCTTCACCCATTGTATCTGTCTCGTTCTGAAACTTATCATGAAGTCCTTGTGTGCACGTTCTAATATGTAGGTCATCTGTGGGTCTATTTGTATGGACTGATTTTTCTCTTAACTATGAGTTCTGTTCTCTTTTCTTTTTTGCATGTTTTATAAGTTTATTTGCCAATTACTGTGTCTTAAAAAAAAACAGTAAAGGTTGAAGTACATTTAAAAATATATATATGTGTATTTTTTCTACTGCCACTCTTAAGAGGAAGGAATGCCCTTTCTTCTGTTGAACATATAGAGTTAGGGACTGATCAGTTTGATCCATTCAAGAGTTAAGCTGGTTTGGGACACGGTTGCAACTTTAATCCCTCTACCTCCCTCTTGTGTCTCTGCCTTTGTCTGTCTCTTTCTCTCTCTTTCTCTGTTCCTGGCTGCTCCCTCTTCCCGTTCCCTTGTACACTCCTTTCAGCTAATCTATTTCCCCCTACCCCATCTCCCTCAAACTGGAAG
Seq C2 exon
CTTCTGGCAGAGGAGAAGGCAGCTGTACTTCGGGCAGTGGAGGAACGTGAGCGGGCCGAGGCAGAGGGCCGGGAGCGTGAGGCTCGGGCCCTGTCACTGACACGGGCACTGGAGGAGGAGCAGGAGGCACGTGAGGAGCTGGAGCGGCAGAACCGGGCCCTGCGGGCTGAGCTGGAGGCACTGCTGAGCAGCAAGGATGACGTCGGCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105357-MYH14:NM_001077186:32
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.565
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)