MmuINT0103356 @ mm9
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:51877108-51878594:-
Coord C1 exon
chr7:51878346-51878594
Coord A exon
chr7:51877321-51878345
Coord C2 exon
chr7:51877108-51877320
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCTGCATTTTTCTCTGCAGCTC
3' ss Score
11.21
Exon sequences
Seq C1 exon
CTCTCTGAATGGCGGCGCCGCCAGGAAGAAGAGGCCGCGGTGCTGGAGGCTGGGGAGGAGGCTCGGCGCCGTGCAGCCCGGGAGGCAGAGACCCTGACCCAGCGCCTGGCAGAAAAGACTGAGGCTGTAGAACGACTGGAGCGAGCCCGGCGCCGACTGCAGCAGGAGTTGGACGATGCCACTGTGGATCTGGGGCAGCAGAAGCAGCTCCTGAGCACACTGGAGAAGAAGCAGCGGAAATTTGACCAG
Seq A exon
GTGAGTGCCTCAGTTTACCCAGCTGGCTACCCTGAGGAACCAGAAACCCATTTGAATACTGGGAGAAACTTGCTAGGGGAGGGGACATTCGAGATAAGTTTTAAAGTCAGCCAGGTAGGTGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACATTTACAAAGCAGGCCACCCTAAGTGTCCTACTTGTGCCTATCGCCCATTGCTTGAGTGTCCCAGTTTGAACAATGATGTACACAAAGTCCTGTCTCCCACCCTGAGGGTGCTTGCATCCTGACTCATTGTCCTGGGCGTTGCTGCGCCCATCTCCGACTCAGTTTACCCATCTAGAAAGCATGAATGATATCAAGGATTCCACATCCTGGAGGATTAAAATAATCATTGCAGATGCCAAAGGTCCATGTGTCCGTCAGCGCTCAGTTACTGTAGCAGACCCTGGAGGCAGCTGACTTAGAAAATAACAAGCATTGTTTTGGCTCACAGGTTTGGAGGGTTTGTCGCTCCGCCATTGGTGCTATTGCTGACAGCTCTGTGAGTCAGAATATCATGGCGGCAGCATGTGGGAGGCATAAACAAGTCAGAGCCCGTCTCAACCATCCCTGCCTACATTTCCATTGCCCGCAATGCCCATCAATTACAGATGGGAGCTTCCAGCCCCAGTGTCTACAGTGAAGGTCATGTCTTTCTAGCTGATTAGAAGACTTTCAGAGGGTGGGTGAGGTGGCTTCCTGGTTAAAGTGAAGGAAGCAGCTCTGCCTCTCCAGCACCCATGTAAATGCTGGCTGGGTGTGGTGGCCATCTATAGTTCCAGCCTTGGTGGCCAGCAGGGCAAGCCAGCTAGCTGTCTCTCCTTGTCTATTTCTTATGTGTCTTTGTGTATGTGTGTTTATTTCTAACTCTGCCTCTCTCGAGTATCTCCTTCCTCCCTCTCCTCCTCCCTTCCCAATCCTCCTTCTAATCAACCCATCTCCCCCTGCATTTTTCTCTGCAG
Seq C2 exon
CTCCTGGCAGAGGAGAAGGCTGCAGTTCTACGGGCTGTGGAAGACCGTGAACGGATAGAGGCCGAAGGCCGGGAGCGAGAGGCCCGGGCCCTGTCGCTGACCCGGGCCCTGGAAGAGGAGCAGGAGGCCCGGGAGGAGCTGGAGAGGCAGAACCGTGCTCTGAGGGCTGAGCTGGAAGCACTGCTGAGCAGCAAGGATGACGTGGGCAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739-Myh14:NM_028021:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.437
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCAGAAAAGACTGAGGC
R:
GTTCTTGCCCACGTCATCCTT
Band lengths:
358-1383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: