RnoINT0096407 @ rn6
Intron Retention
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100622883-100624334:-
Coord C1 exon
chr1:100624086-100624334
Coord A exon
chr1:100623096-100624085
Coord C2 exon
chr1:100622883-100623095
Length
990 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CCCTGCATTTTTCTCTGCAGCTC
3' ss Score
11.21
Exon sequences
Seq C1 exon
CTCTCTGAATGGCGGCGACGCCAGGAAGAAGAGGCTGCCGTGCTGGAGGCTGGGGAGGAGGCTCGGCGCCGTGCAGCCCGGGAGGCAGAGACCCTGGCCCAGCGCCTGGCAGAAAAGACTGAGGCTGTAGAAAGACTGGAGCGAGCCCGGCGGCGGCTGCAGCAGGAGCTGGACGACGCCACTGTGGACCTGGGGCAGCAGAAACAGCTCCTGAGCACACTGGAGAAGAAGCAGCGAAAGTTTGACCAG
Seq A exon
GTGAATGCCACCCTGAGGAACCAGAAGCCCATTTGAATATCGGGAAAATTTTGCTAGCAGAGGGAACATTTGAGATAAGTTTTGAAGTAGGCATAGGAGTTGTGTCACAGCCAGGTAGGGGCTGACTCTGCCACAAAATAGTCTATAAAGCAGGCCACTGCGAGTGTCCAGCTTGTGCCTGTCACCCCATTGCTTGAGTGCCCCAGTTTAAATAAAGGTGTACAGAACATCCTGTCTTGTGCCCCTGAGGGTTCTTACACCCTGCCTCAGTTGTCCTGTGTGTTGCTGCTCCCATTTCAGCCTCAGTCTATCCATCTAGAAAGTGGGAATCTTATCAAGCGTACCGCATCCTTGAGGATTAAAATAATCATTGCAGATGCCAGAGGTTCGCATGCCTGTCAGCATTCTGTTACTGCTGCAAGCACTAGAGGCGACTGGCGAGGAAAAAGCATTATTTTGGCTCATGGGTTTGGAGGGTTTGGTTCTCAGCCATTAGTGCTATTGCTGACAGCTCTGTGAGTCAGAAGATCGTGGTGGCAGCAAGTGGCGGCATAACCAGAAGTCAGACAGAGCCCTTTTCAACCATTCTTGCCTAGGTTTCCATGCCCAAAAAGCCCATCAATTACAGATGGGAGTTTCCAGTCCCCAGTGTCTGTAGCGAAGGTCACGTGTCTTTCTGGCTGATTAAAAGATTTTCAGAGGGCCGATGAGGTGGCCCACCCTGGTTAAAGTGAAGGTGCAGTTCAGCCTCTCCAACGTCCATGTAAACGCTGGGTGGGTGTGGTGGCCATCTGTAGTTCCAGCCTTGGTAGCCAGCAGAGGAGGCTGGCTAGCTGTCTCTCCCCCTGTCTATTTCTTGTGTCTCTTTGTGTGTGTGTCCCTCTTTATTTCTAACTCTGTCTCTCTCAAGTATTCTCTTTCCTCCCTCTCCACCTCCCTTCCCCACCCTCCTTCCAGTCAACCCATCTCCCCCTGCATTTTTCTCTGCAG
Seq C2 exon
CTCCTGGCAGAGGAGAAGGCTGCAGTGCTACGGGCTGTGGAAGATCGTGAACGGGTAGAGGCTGAAGGCCGGGAGCGAGAGGCCCGGGCCCTGTCGCTGACACGGGCCCTGGAAGAGGAGCAGGAGGCACGGGAGGAGCTGGAGAGGCAGAACCGTGCTCTGCGGGCTGAGCTGGAGGCACTGCTAAGCAGCAAGGATGATGTTGGCAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014:ENSRNOT00000027132:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCAGAAAAGACTGAGGC
R:
GCCAACATCATCCTTGCTGCT
Band lengths:
352-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]