BtaINT0097237 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53596329-53598345:-
Coord C1 exon
chr1:53598169-53598345
Coord A exon
chr1:53596475-53598168
Coord C2 exon
chr1:53596329-53596474
Length
1694 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ATAACATCTCCTTTTGTCAGCTT
3' ss Score
5.93
Exon sequences
Seq C1 exon
GTCAAGAACCTGCTTGAGGAGGTGGAGTCTCTCAATGAGGATGTGAGCAAACTGCATCGAGCAGCCAGGGCTGCACAGGAGACCCACCAGCAGACCCTGGAGGACTTGCGCAACGAGGAGGAGAAAGTCCACACCCTAAGCAAGGCCAAGTTGACGCTGGAGCAGCGAGTGAATGAG
Seq A exon
GTCAGTAGTGATATGTTTGCCTAGTTAGCTGCCTGTCTACATCTATAGAAACCTTCACTTTTTACTTAGTTAATTTATCTTGACATTTTCATGAAAACTTAGTAGCATGGTTCATTTCCCTCATTATTTAGAAACAGAGGTGAACTGCTACAGTGGAAGAGAGGCCCCAGTATGTGTTCTGTCTGTTGTTAAATGAAACTTTCATAACAACCCTGGGCAGTGGGAGAATACTGAGATTAATCGTGAGGTGGGAGCACTCTACATGACTGACTTCCCCACAGAAGCTGGTGTTTGCCCTGCTAATGTGCTGGTGCTCTATCTGATGCTAGCACTGAAGGATTGCTTAAAGGCCCCATGTCTCCAGCAGTGCACTGAGGTTTGTTATAGAAGAAAGATATGTAAGTCGCAAGCAGTGTTCTACCAATGCTATCGGAATATACTTGTAAGATTCTGGAGATGGTGCTTCTATTCTGCTTCCAAAACCCTGTGAAATAAAGATGTTTCAGACCAGTCTCAGTGGGTAGGTTCATCACTCTCCCTGTCTCTTACCCAGCTGACAAGAGTGTATGCATTCGCTGTTTTATTAGTCCCCAAAGCTTAGCTTTTATAAAATTGCTGGCAAGTGTGGTTTTTTTTGTTTTTTTGTTTTTTTTTGATTATCTGCTTCTTGTTCCTCGTGCCTGTCTATCAATTTTCCTCTGTTACCTATTAGTTGTCTCACTTCTCTTCCTGTTTCCATGGATATATATTTTACAAAGCCTCAATATGGGAATTTGTTGGTGTGTGCACACAACACACACACACTCTCACACATGTATTTTCACACATTTGCTCTCTCCTAGAGTTCATTTATTTTTTGGTTTTGCATACACCTTCCAGAAATTCTCCCTTCTCCCCTATTTGAATTTTATATCTTTCGCTGCTTACAGGAAATAGCTTCTATTGTGGGAAAGTTAATATATCAATGAAAAATAGCCATATTGTAACTATTATTTTGCCTCCTGCTAAACTGACCTCAATATCATTGTTGGCAACACTAATCTGGACAGAACTGTAGTATTTTGGCCTTCTGGTACCTTGCTGGAGGTACCAGAAGATGACATACTGCTATGGACCAGAGACGGTACCAGGGTGGTAAAGGAGAATATGGAAATTATCTTGTGTGAGGTGCGTTTGGAATGGTCAGTGATGCTGAGTTGGGAGACTCAGGACAGCTGCCTAATATTCATGAATGGTCACGTGGAGACAGATTTGCTTGGTGTTGCTCCAGGGAGCAGAGCCTAGATTTGTGGGACGGATTTACAGGGACTATTTTGGCTTCTTACGAAGAAGCCCTCCTGAGTAAATGGACTTATCCACCCATGAAATGAGCTGCCATGTGAAGAAGTGAGCTTCTCATCACTGGAAAGCTATCAAATAGGGTCTCACTGGGCATTTATTATTTGTTTTTTCTGTATTCTAGAGCACGTATTCCTTAATCTCTAAAGATTTCCTTTGTCACTGACTTCTAGATTCTTTTGTAATCCCACTGATGTGTGCAACATTTATTTTAAAATATCTACATAACTGGGCATCGTTTACAGACTATGCTTATATTTTTCTTTCTTTTTCCAGAAGGTAAGTGGTTAAAGAACACATCTGTAAAGTATAAACTTAACCTATATATTGGGCTCAATAACATCTCCTTTTGTCAG
Seq C2 exon
CTTGAGGGTGCCCTTGAGCAGGAGAGCAAAGCAAGAATGAACTGTGAGAAGGAAAAGTGCAAAGTGGAGGGCGAGTTAAAGCTGAACCAGGAGAGCATGGACGACCTGGAGAGCAGGCAACTGCAACTAGCAGAAAAGCTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.816
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(26.2=100),PF087025=Fib_alpha=PU(15.5=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(14.9=67.3),PF087025=Fib_alpha=FE(41.4=100),PF131661=AAA_13=PU(25.5=71.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAACCTGCTTGAGGAG
R:
TCCTCAGCTTTTCTGCTAGTTGC
Band lengths:
321-2015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development