GgaINT0119194 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90795110-90795934:-
Coord C1 exon
chr1:90795758-90795934
Coord A exon
chr1:90795256-90795757
Coord C2 exon
chr1:90795110-90795255
Length
502 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
GAGTGACTTTGTACCTAAAGCTT
3' ss Score
2.78
Exon sequences
Seq C1 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
Seq A exon
GTAAGCTGGCTTGGCCTTCATTTTTCTGCATGCTTGTTTGTCCAACACTAACAGTTTTCATGAGCCTGAAATGTCACAAAGCTTTGTCCTCTCAGAATCAATCACGTATTTATAAATGTAGCTCTTGTTGAATTGTCTGTAAAAAGTAAAATGACAGCAACAACGTGAATCTTATCTGCATGCTCAAGCCTCCGAAAGAAATGTAATGAAAAAGAGAAAATCTACTAAGTTTGCATTTGCAGTGTAACTTGACTTGCAAACAGAACTTTGCTACAAAGAGAACTGCAGTGCTTACTCAAACATAAAGCATGGACTAATCCTTATATTTCTTTAGCACATATGTCCATTGGCTGCCAGAAAACAAGAAACAAGATCGTATGCCTATGCTTATGTACTTCTTCAACACTTGCTAGAGCTCAGCATGAAGATGGATTTAGTATGCAACTGACTGTTGTAAACAACCTGTGTTGAATATATTTAATGAGTGACTTTGTACCTAAAG
Seq C2 exon
CTTGAGGGCTCGCTTGAGCAAGAGAAGAAAGTGAGGATGGATCTAGAAAGAGCAAAACGCAAACTGGAAGGAGATTTGAAGCTGACCCAAGAGAGTGTCATGGACTTGGAGAATGATAAGTTGCAAATGGAAGAAAAGCTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.694
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(30.2=93.2),PF0157614=Myosin_tail_1=PU(47.8=55.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(31.8=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATCTGACAGAAGAAATGGCG
R:
TCAGCTTTTCTTCCATTTGCAACT
Band lengths:
318-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]