HsaINT0107642 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108437554-108439913:-
Coord C1 exon
chr3:108439737-108439913
Coord A exon
chr3:108437700-108439736
Coord C2 exon
chr3:108437554-108437699
Length
2037 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ATAATGTTTCCTTTTGTCAGCTT
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTCAAGAACTTGACTGAGGAAGTAGAGTTTCTAAATGAGGATATCAGCAAACTTAACAGAGCAGCCAAGGTTGTGCAGGAGGCCCATCAGCAGACCCTGGATGACCTGCACATGGAGGAGGAGAAGCTCAGCAGCCTGAGCAAAGCAAATCTGAAGCTGGAACAGCAAGTTGATGAG
Seq A exon
GTCAGTAACGGTGTATCTGGTTAGTTATCTATCTGTCTACATATACACATAACTCCAGTTTTTACTTCATTAATTTATCTTGACAGTTTCAGAAAAACCTAGTAGCATAGTTTGTTTTCCTGATTATTGAGAATAAAAGGGTTCTTTTTCTTATACACAAAACCACGATAGTATAAGAGAGGTCTCTGCATATAATCTGTCGGTTTTTAAATGCAATTTTCATTCAACCCTGGGCAATGGAAAAAGAACATTAAGATGAATGGTAAAGGGTTATCACTCTAGGTGACTGGCTTTTCCCCATATCTCCCACAGAACCTGGTATTTTGCCCCACAGATATGCTGGTACTCTATTTACCACTAGTGTTGAAGGATTAGTTTTAAAGGCCATGTGTGTTTCCAGTGGTGTGCTGAGATTTATTTATGGTTGAAAGATATGTGAGCCACAAGTTGTGTTCTACCTACACTATTGGAAAATACTTTTAAGATTCTAGAGATGATGCCCCTATTTTGCCTCTAAATGCCCTGTGAAATAAAGCTGTTTCACACCAGTTTCAATGTGTGGGTTCATAATTCTTCCTTTTTCCCACCCCAGCTGACATAGTGTATGCATTTATGCTCACAGTAGTCCCCAAAGTGTAGCCTTTATAAAATTGTTGACAAGAGTGGTTAGGTTTTTTTTTTTTCTTCTTATCTGCTGCTCTTTCTTCCTGCCTCTATATAAATTTCTTCTATTATCTATTCGTTGTGTTACATTTGTTCCTATTTCCAATAATAACATATCTCACAAAGCCTCAGCATAAGGATTTTTGGGTGTTTATATGTGTGCTTATATATGCACATCACACACACCTACCCACACCCACACACCCACCCACACACTTATTCTCTCCTGGTGTCTTAGTCCATTCAGGCTGCTATAATAAAATACCATAAACTGGGTGGCAAATAAATAGCAGTTTATTTCCTACAGTTCTGGAGGCTGGGAAGTCCATGATCAAAGTACCAGCAGAGTTGGTGTCTAGTGAGAACTCATTTCCTGGTTTATGGAGGGTGACTTCTCCCTGTGTCCTCACATCACACAAGGAACAAGGGAGCTCTCCAGGATCTCTTTTATAAGGACTAATTCCATTCATGGGGGCTCTACCTTCATGACCTCATCACTTCCTAAAGGGCCCACCTCCCAACACCATCATACTGGGAATTAGGATTTCAGCGTATGAATTTGGAATCCTTTCCAGAATTTCTCCCTCCTTCCCAATTTGAATTTCATCTCTTTGGCTGGTTACAGAGGATATCTTCCATTGTTTTAAAGTAAACATATCAATAAATAAAAAGCCATATTGTGACTGTTATCTAGCTTCCTGGAAAATTAACCTCTATATAATTCCTGGCAATACTAATCCATACAAAACTGGAATGTTCTGATGGGGAACATTTAGTGAGGAACCAGAATATGACATAATGTTATGAACTGGAAGAGGGTACCAAGGTGGTGACGGGGCTTGGAAATCATGACATGTGAGAATGTGTTTGAATGGGCCAGTGATGCCAGGGGGTTCTTGCAAATTATTAAGGATGATCATGCGGAAACTGATTTGCTTGGTGTTGCTCCAGGGAGCAGAGCTTGTACTTGTGGATAGAATTTACAGGGAATATTTTGGCTTCTTATGAAGAAGCACTCCCAAGTAAATGGACTTATCCACCCGTGAAATGAGCCGCCATGTGAAGAAGTGAGCTTCCTATCATTGGAAAACGATCAATCAAGGGCTCACTGGCCATTTCTTGTTGGTTCCTTCCCTAAGACAGAACTCATATTCTGTTATTTCTAGTTTTCTTCCATCCCTGTGATTTCTGGATTCTTTTGTTAACCTATTGACATATGCAATATTTATTTGGAAATATCTATGTTACTGGGCATCATTTATAGAATTTGTGCTTGTGTCTTTCTTTTTCCAGAAGGTAAGTGGTTAATGAACACATCTAGTGAAGTATAAACTCTACCTATTTATTTAGCTAAATAATGTTTCCTTTTGTCAG
Seq C2 exon
CTTGAGGGTGCCCTTGAGCAGGAGAGAAAAGCGAGAATGAACTGTGAAAGGGAACTGCACAAACTGGAGGGCAATTTAAAGCTGAATCGGGAAAGTATGGAGAACCTGGAAAGCAGCCAGCGACACCTGGCAGAAGAGCTGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.980
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(25.3=100),PF131661=AAA_13=FE(24.0=100),PF045827=Reo_sigmaC=PU(23.9=54.2),PF087025=Fib_alpha=PU(15.7=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(15.3=71.4),PF131661=AAA_13=FE(19.8=100),PF087025=Fib_alpha=FE(41.7=100),PF045827=Reo_sigmaC=PU(30.4=77.6),PF0157614=Myosin_tail_1=PU(2.7=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development